miRNA display CGI


Results 1 - 20 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 69939 0.66 0.82942
Target:  5'- cGCGACgccggaCGCCUGaccacCCGCGCCC-GCcCCc -3'
miRNA:   3'- -CGCUGa-----GCGGGU-----GGUGCGGGuCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 137209 0.66 0.824677
Target:  5'- gGCGGCcgggaCGCCCuucuuucagaucccCCGCGCaCCGGCcgggGCCg -3'
miRNA:   3'- -CGCUGa----GCGGGu-------------GGUGCG-GGUCG----UGG- -5'
14631 5' -60.3 NC_003521.1 + 209523 0.66 0.82942
Target:  5'- gGUGACcgUCGCCgCugCcgcgguuauGCGCCCGGCGg- -3'
miRNA:   3'- -CGCUG--AGCGG-GugG---------UGCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 150166 0.66 0.824677
Target:  5'- uGCGAaagguuuauugaaaaCUUGCgCUACCGCuCCCGGCggGCCu -3'
miRNA:   3'- -CGCU---------------GAGCG-GGUGGUGcGGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 105020 0.66 0.86662
Target:  5'- cGCGcCUCcCuCCGCCGCuGCUccuccucccgCAGCGCCa -3'
miRNA:   3'- -CGCuGAGcG-GGUGGUG-CGG----------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 18984 0.66 0.82942
Target:  5'- gGUGGa-CGCCCACaGCGgCCAGCugUu -3'
miRNA:   3'- -CGCUgaGCGGGUGgUGCgGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 56114 0.66 0.82942
Target:  5'- aGCG--UCGCgUAU--UGCCCAGCACCa -3'
miRNA:   3'- -CGCugAGCGgGUGguGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 126831 0.66 0.82942
Target:  5'- cGCGuGCUCGCCCACgAa---CuGCACCg -3'
miRNA:   3'- -CGC-UGAGCGGGUGgUgcggGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 239854 0.66 0.820683
Target:  5'- aGCaGAC-CGCCgGCCucucguuGCGCCCAcuuGCGCa -3'
miRNA:   3'- -CG-CUGaGCGGgUGG-------UGCGGGU---CGUGg -5'
14631 5' -60.3 NC_003521.1 + 116644 0.66 0.821485
Target:  5'- aGCGGCagcuaCGCCgGCCucuCGCucuCCAGcCGCCg -3'
miRNA:   3'- -CGCUGa----GCGGgUGGu--GCG---GGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 123666 0.66 0.821485
Target:  5'- aGCGACagGCgCACgAUGgCCAucuGCGCCa -3'
miRNA:   3'- -CGCUGagCGgGUGgUGCgGGU---CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 166288 0.66 0.819074
Target:  5'- cGCGGCUgGUCCGCguggccucguugcgUACGgCCAGCAg- -3'
miRNA:   3'- -CGCUGAgCGGGUG--------------GUGCgGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 43480 0.66 0.828634
Target:  5'- cGCGGCggccgUGCUgGCCGCGgCggccaacauccguCAGCGCCu -3'
miRNA:   3'- -CGCUGa----GCGGgUGGUGCgG-------------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 143269 0.66 0.82942
Target:  5'- cGCGGCcugaccugCGaCCCGCgCAUGUUCgAGCGCCu -3'
miRNA:   3'- -CGCUGa-------GC-GGGUG-GUGCGGG-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 217239 0.66 0.821485
Target:  5'- uGCaGGCcagCaCCC-CCGCGCCCAcCACCa -3'
miRNA:   3'- -CG-CUGa--GcGGGuGGUGCGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 42555 0.66 0.821485
Target:  5'- cGCGA--CGCCCGgCugGCuguCCGGCgGCCg -3'
miRNA:   3'- -CGCUgaGCGGGUgGugCG---GGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 55201 0.66 0.821485
Target:  5'- gGCGAUggcaGUCCGCCGCGCUCcgucGGCGu- -3'
miRNA:   3'- -CGCUGag--CGGGUGGUGCGGG----UCGUgg -5'
14631 5' -60.3 NC_003521.1 + 71290 0.66 0.821485
Target:  5'- cGCGGCacggGCCCcUgGgGCaCCAGCACCu -3'
miRNA:   3'- -CGCUGag--CGGGuGgUgCG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 204412 0.66 0.821485
Target:  5'- cCGAC-CGCgaaauCCACGCCCcGCGCUg -3'
miRNA:   3'- cGCUGaGCGggu--GGUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 111839 0.66 0.821485
Target:  5'- aGCGuggUGCCCAgCAuCGUcuuuuuCCAGCGCCa -3'
miRNA:   3'- -CGCugaGCGGGUgGU-GCG------GGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.