miRNA display CGI


Results 1 - 20 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 228471 1.13 0.001083
Target:  5'- aGCGACUCGCCCACCACGCCCAGCACCa -3'
miRNA:   3'- -CGCUGAGCGGGUGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 141841 0.83 0.122549
Target:  5'- uGCGACgCGCCUACgGCuCCCGGCACCg -3'
miRNA:   3'- -CGCUGaGCGGGUGgUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 224983 0.82 0.148728
Target:  5'- aGCGG-UCGCCCACCAgcaccacgcacuUGCCCAGCACg -3'
miRNA:   3'- -CGCUgAGCGGGUGGU------------GCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 111605 0.81 0.171602
Target:  5'- aGCGGCgccggacUGCCCACCACGCgCCAGacCACCa -3'
miRNA:   3'- -CGCUGa------GCGGGUGGUGCG-GGUC--GUGG- -5'
14631 5' -60.3 NC_003521.1 + 16398 0.8 0.184181
Target:  5'- --cGCUCGCCCACCACGC--AGCGCCu -3'
miRNA:   3'- cgcUGAGCGGGUGGUGCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 91193 0.8 0.193014
Target:  5'- aGCacCUCGCCgGCgGCGUCCAGCGCCg -3'
miRNA:   3'- -CGcuGAGCGGgUGgUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 137149 0.79 0.201746
Target:  5'- -gGACUCGCCCGCCAUggccgcgGCCgCAGCgGCCg -3'
miRNA:   3'- cgCUGAGCGGGUGGUG-------CGG-GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 197683 0.79 0.202215
Target:  5'- aGCG-CgUGCaCCuCCACGCCCAGCGCCg -3'
miRNA:   3'- -CGCuGaGCG-GGuGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 127441 0.79 0.204101
Target:  5'- aGCGGCUCGUCgGCCagcuggccguuguugACGCCCgccAGCGCCg -3'
miRNA:   3'- -CGCUGAGCGGgUGG---------------UGCGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 4322 0.79 0.206957
Target:  5'- gGgGGCUCGaCCguCCAUGCCUGGCGCCa -3'
miRNA:   3'- -CgCUGAGC-GGguGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 120045 0.79 0.211795
Target:  5'- cGCG-CUCGCCCACCGCGC--AGUGCCc -3'
miRNA:   3'- -CGCuGAGCGGGUGGUGCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 32073 0.79 0.211795
Target:  5'- aCGuACUgGCCCgugGCCACGgCCAGCGCCa -3'
miRNA:   3'- cGC-UGAgCGGG---UGGUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 60421 0.79 0.213758
Target:  5'- cGCGGC-CGCCagCACCaccagcaguacuccgGCGCCCAGUACCa -3'
miRNA:   3'- -CGCUGaGCGG--GUGG---------------UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 129607 0.79 0.226896
Target:  5'- cCGugUCGCCCacuuuccggcGCCAuCGCCCAGC-CCa -3'
miRNA:   3'- cGCugAGCGGG----------UGGU-GCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 95186 0.78 0.242898
Target:  5'- cGCG-CUCGgCgCGgaacuCCACGCCCGGCACCg -3'
miRNA:   3'- -CGCuGAGCgG-GU-----GGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 202587 0.78 0.242898
Target:  5'- cGCGuCUCGCCCcgcccGCCGaggcCGCCCuGCGCCu -3'
miRNA:   3'- -CGCuGAGCGGG-----UGGU----GCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 25369 0.78 0.25408
Target:  5'- cGUGGCUC-CCUcgGCCugGCgCCAGCACCc -3'
miRNA:   3'- -CGCUGAGcGGG--UGGugCG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 203006 0.77 0.265092
Target:  5'- gGCGGCUCGCCCGCCAagacggGUUCGGCggugauaGCCg -3'
miRNA:   3'- -CGCUGAGCGGGUGGUg-----CGGGUCG-------UGG- -5'
14631 5' -60.3 NC_003521.1 + 29343 0.77 0.265682
Target:  5'- cCGACUaCGUgCGCUGCGCCCuGCGCCu -3'
miRNA:   3'- cGCUGA-GCGgGUGGUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 137846 0.77 0.269843
Target:  5'- cGCGGCUgGgCCGCCccgccagagccccgACGCCCgAGCGCCu -3'
miRNA:   3'- -CGCUGAgCgGGUGG--------------UGCGGG-UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.