miRNA display CGI


Results 1 - 20 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 134112 0.76 0.303057
Target:  5'- gGUGGC-CGUCCugCGCGCCUAGCugACCc -3'
miRNA:   3'- -CGCUGaGCGGGugGUGCGGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 56911 0.77 0.277709
Target:  5'- cGCGACagCGCCgcagCACCGCcUCCAGCACCu -3'
miRNA:   3'- -CGCUGa-GCGG----GUGGUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 187731 0.77 0.277709
Target:  5'- cGUGACUUGUCUcaucGCCACGUCCAGCgACUg -3'
miRNA:   3'- -CGCUGAGCGGG----UGGUGCGGGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 129233 0.77 0.277709
Target:  5'- cCGGCgcCGCUgGCCACGCgCGGCACCu -3'
miRNA:   3'- cGCUGa-GCGGgUGGUGCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 74178 0.77 0.290166
Target:  5'- cCGACU-GCgCCGCgGCGCCCGGCGCg -3'
miRNA:   3'- cGCUGAgCG-GGUGgUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 218877 0.77 0.290166
Target:  5'- cGCG-CUCGCCCACUA-GCuCCAGC-CCg -3'
miRNA:   3'- -CGCuGAGCGGGUGGUgCG-GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 188136 0.77 0.296557
Target:  5'- aGCGGCUgGCaCCGCCgACGCugCCGGUGCCg -3'
miRNA:   3'- -CGCUGAgCG-GGUGG-UGCG--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 127252 0.77 0.296557
Target:  5'- aGCGGCUCGUcggcguCCAUgGCGCCCAGgCGCg -3'
miRNA:   3'- -CGCUGAGCG------GGUGgUGCGGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 114511 0.77 0.296557
Target:  5'- cGUGGCcgccgUGCCCACCGcCGCCacgGGCACCa -3'
miRNA:   3'- -CGCUGa----GCGGGUGGU-GCGGg--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 165761 0.77 0.275877
Target:  5'- gGCGGCUUGCCCAUCAUcgugccgaaggccaGCCCgcuGGCGCUg -3'
miRNA:   3'- -CGCUGAGCGGGUGGUG--------------CGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 137846 0.77 0.269843
Target:  5'- cGCGGCUgGgCCGCCccgccagagccccgACGCCCgAGCGCCu -3'
miRNA:   3'- -CGCUGAgCgGGUGG--------------UGCGGG-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 29343 0.77 0.265682
Target:  5'- cCGACUaCGUgCGCUGCGCCCuGCGCCu -3'
miRNA:   3'- cGCUGA-GCGgGUGGUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 141841 0.83 0.122549
Target:  5'- uGCGACgCGCCUACgGCuCCCGGCACCg -3'
miRNA:   3'- -CGCUGaGCGGGUGgUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 224983 0.82 0.148728
Target:  5'- aGCGG-UCGCCCACCAgcaccacgcacuUGCCCAGCACg -3'
miRNA:   3'- -CGCUgAGCGGGUGGU------------GCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 137149 0.79 0.201746
Target:  5'- -gGACUCGCCCGCCAUggccgcgGCCgCAGCgGCCg -3'
miRNA:   3'- cgCUGAGCGGGUGGUG-------CGG-GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 127441 0.79 0.204101
Target:  5'- aGCGGCUCGUCgGCCagcuggccguuguugACGCCCgccAGCGCCg -3'
miRNA:   3'- -CGCUGAGCGGgUGG---------------UGCGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 4322 0.79 0.206957
Target:  5'- gGgGGCUCGaCCguCCAUGCCUGGCGCCa -3'
miRNA:   3'- -CgCUGAGC-GGguGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 32073 0.79 0.211795
Target:  5'- aCGuACUgGCCCgugGCCACGgCCAGCGCCa -3'
miRNA:   3'- cGC-UGAgCGGG---UGGUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 120045 0.79 0.211795
Target:  5'- cGCG-CUCGCCCACCGCGC--AGUGCCc -3'
miRNA:   3'- -CGCuGAGCGGGUGGUGCGggUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 202587 0.78 0.242898
Target:  5'- cGCGuCUCGCCCcgcccGCCGaggcCGCCCuGCGCCu -3'
miRNA:   3'- -CGCuGAGCGGG-----UGGU----GCGGGuCGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.