Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14632 | 3' | -47.1 | NC_003521.1 | + | 228925 | 1.08 | 0.033638 |
Target: 5'- gAUCUCCUCCACGUAGAGAAAGAAAUCc -3' miRNA: 3'- -UAGAGGAGGUGCAUCUCUUUCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 174104 | 0.66 | 0.999982 |
Target: 5'- --gUCCUCCACacUAGGGGAgcagacccucaGGggGUCg -3' miRNA: 3'- uagAGGAGGUGc-AUCUCUU-----------UCuuUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 2086 | 0.66 | 0.999982 |
Target: 5'- aAUgUUCUCaCGCGagaAGAGAGAGAAAUg -3' miRNA: 3'- -UAgAGGAG-GUGCa--UCUCUUUCUUUAg -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 86243 | 0.66 | 0.999966 |
Target: 5'- -gCUCCUUgACGUGcAGGgcGAAGUCg -3' miRNA: 3'- uaGAGGAGgUGCAUcUCUuuCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 221747 | 0.67 | 0.999939 |
Target: 5'- -cCUCCUCCucACGgcccagcugGGAGGAcGGGAUCu -3' miRNA: 3'- uaGAGGAGG--UGCa--------UCUCUUuCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 140703 | 0.67 | 0.999895 |
Target: 5'- aAUUUCCUCCugGU-GAGAAcGucAUCc -3' miRNA: 3'- -UAGAGGAGGugCAuCUCUUuCuuUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 147041 | 0.67 | 0.999895 |
Target: 5'- cUUUCgCUCUGCGaccccGGGGGAGGGAGUCg -3' miRNA: 3'- uAGAG-GAGGUGCa----UCUCUUUCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 103164 | 0.68 | 0.999712 |
Target: 5'- ---gUCUCCACGUagucguGGAGAAAGuuGUCc -3' miRNA: 3'- uagaGGAGGUGCA------UCUCUUUCuuUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 187103 | 0.69 | 0.999295 |
Target: 5'- cUCcCCUCCGCGcgAGAGAuuGAAGa- -3' miRNA: 3'- uAGaGGAGGUGCa-UCUCUuuCUUUag -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 95864 | 0.74 | 0.977931 |
Target: 5'- cUCUCCUCCucuguucuggcuGCGUGGAGAGacggcggGGAauGAUCg -3' miRNA: 3'- uAGAGGAGG------------UGCAUCUCUU-------UCU--UUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 206090 | 0.74 | 0.978175 |
Target: 5'- uUCUCCUCCACGaggaagugugUAGGGAGGccGGUCa -3' miRNA: 3'- uAGAGGAGGUGC----------AUCUCUUUcuUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 217632 | 0.71 | 0.996244 |
Target: 5'- cAUCUCCUCgGCGUGGucGggGGGcauggcggGAUCc -3' miRNA: 3'- -UAGAGGAGgUGCAUCu-CuuUCU--------UUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 167325 | 0.71 | 0.996815 |
Target: 5'- --aUCCUCCGgGUcGAGGAGGAGcUCg -3' miRNA: 3'- uagAGGAGGUgCAuCUCUUUCUUuAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 116185 | 0.7 | 0.997744 |
Target: 5'- -gCUCCUguggCCGCGgAGAGGAGGGAgacGUCg -3' miRNA: 3'- uaGAGGA----GGUGCaUCUCUUUCUU---UAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 81701 | 0.7 | 0.998706 |
Target: 5'- cUCaUCUUCCACGUcccaGGAGAGcacGGAGUCg -3' miRNA: 3'- uAG-AGGAGGUGCA----UCUCUUu--CUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 34478 | 0.66 | 0.99999 |
Target: 5'- uUUUCCcCUACGUAGG---GGAAAUCa -3' miRNA: 3'- uAGAGGaGGUGCAUCUcuuUCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 178155 | 0.72 | 0.99306 |
Target: 5'- --gUCCagCAUGUAGAGAAAGAGggcGUCg -3' miRNA: 3'- uagAGGagGUGCAUCUCUUUCUU---UAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 93417 | 0.71 | 0.994849 |
Target: 5'- -gCUCUgaaaaCCACGUccGAGGAGGAGAUCg -3' miRNA: 3'- uaGAGGa----GGUGCAu-CUCUUUCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 37320 | 0.71 | 0.995591 |
Target: 5'- cGUCUCCUCUggGUGGGGGcggucgcgGAGGAcgCa -3' miRNA: 3'- -UAGAGGAGGugCAUCUCU--------UUCUUuaG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 236402 | 0.71 | 0.996244 |
Target: 5'- uUCUCCgggagUCGCGaaagccgGGAGGAGGAGGUCc -3' miRNA: 3'- uAGAGGa----GGUGCa------UCUCUUUCUUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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