miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14632 3' -47.1 NC_003521.1 + 116185 0.7 0.997744
Target:  5'- -gCUCCUguggCCGCGgAGAGGAGGGAgacGUCg -3'
miRNA:   3'- uaGAGGA----GGUGCaUCUCUUUCUU---UAG- -5'
14632 3' -47.1 NC_003521.1 + 167325 0.71 0.996815
Target:  5'- --aUCCUCCGgGUcGAGGAGGAGcUCg -3'
miRNA:   3'- uagAGGAGGUgCAuCUCUUUCUUuAG- -5'
14632 3' -47.1 NC_003521.1 + 236402 0.71 0.996244
Target:  5'- uUCUCCgggagUCGCGaaagccgGGAGGAGGAGGUCc -3'
miRNA:   3'- uAGAGGa----GGUGCa------UCUCUUUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 217632 0.71 0.996244
Target:  5'- cAUCUCCUCgGCGUGGucGggGGGcauggcggGAUCc -3'
miRNA:   3'- -UAGAGGAGgUGCAUCu-CuuUCU--------UUAG- -5'
14632 3' -47.1 NC_003521.1 + 37320 0.71 0.995591
Target:  5'- cGUCUCCUCUggGUGGGGGcggucgcgGAGGAcgCa -3'
miRNA:   3'- -UAGAGGAGGugCAUCUCU--------UUCUUuaG- -5'
14632 3' -47.1 NC_003521.1 + 93417 0.71 0.994849
Target:  5'- -gCUCUgaaaaCCACGUccGAGGAGGAGAUCg -3'
miRNA:   3'- uaGAGGa----GGUGCAu-CUCUUUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 178155 0.72 0.99306
Target:  5'- --gUCCagCAUGUAGAGAAAGAGggcGUCg -3'
miRNA:   3'- uagAGGagGUGCAUCUCUUUCUU---UAG- -5'
14632 3' -47.1 NC_003521.1 + 206090 0.74 0.978175
Target:  5'- uUCUCCUCCACGaggaagugugUAGGGAGGccGGUCa -3'
miRNA:   3'- uAGAGGAGGUGC----------AUCUCUUUcuUUAG- -5'
14632 3' -47.1 NC_003521.1 + 95864 0.74 0.977931
Target:  5'- cUCUCCUCCucuguucuggcuGCGUGGAGAGacggcggGGAauGAUCg -3'
miRNA:   3'- uAGAGGAGG------------UGCAUCUCUU-------UCU--UUAG- -5'
14632 3' -47.1 NC_003521.1 + 75952 0.84 0.596576
Target:  5'- uUCUCCUCCGCGaccuucucgucgaGGAGGAAGAAGUCu -3'
miRNA:   3'- uAGAGGAGGUGCa------------UCUCUUUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 228925 1.08 0.033638
Target:  5'- gAUCUCCUCCACGUAGAGAAAGAAAUCc -3'
miRNA:   3'- -UAGAGGAGGUGCAUCUCUUUCUUUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.