Results 1 - 20 of 22 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 204672 | 0.66 | 0.886514 |
Target: 5'- gGGuGUCCUCCUCcucgggcaggGUCgaCGAGGgcagcgAGGUGa -3' miRNA: 3'- gCCuCAGGAGGAG----------CAG--GCUCC------UCCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 164851 | 0.66 | 0.886514 |
Target: 5'- gCGaGGGcCgCUCCUCGUCgGGGGuguguaacuacgAGGUGg -3' miRNA: 3'- -GC-CUCaG-GAGGAGCAGgCUCC------------UCCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 17219 | 0.66 | 0.886514 |
Target: 5'- aCGGAGgCCgaggUCUCGgaggCCGAGGuGGa- -3' miRNA: 3'- -GCCUCaGGa---GGAGCa---GGCUCCuCCac -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 39577 | 0.67 | 0.873204 |
Target: 5'- uCGGAGUCCUgCCggCGUCgGcGGuccugcccuGGGUGg -3' miRNA: 3'- -GCCUCAGGA-GGa-GCAGgCuCC---------UCCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 209712 | 0.67 | 0.873204 |
Target: 5'- aGGcg--CUCCagGUCCGAGGAGGUc -3' miRNA: 3'- gCCucagGAGGagCAGGCUCCUCCAc -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 205439 | 0.67 | 0.86626 |
Target: 5'- gCGGcccgCgUCCUCG-CCGAGGGGGa- -3' miRNA: 3'- -GCCuca-GgAGGAGCaGGCUCCUCCac -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 83721 | 0.67 | 0.859131 |
Target: 5'- aGGGGUCCagggCCUCGUgcuccuccucaCCGcGGGGGg- -3' miRNA: 3'- gCCUCAGGa---GGAGCA-----------GGCuCCUCCac -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 124421 | 0.67 | 0.859131 |
Target: 5'- cCGcGAGaUCUCCUCGUCCGGcGAGacGUGg -3' miRNA: 3'- -GC-CUCaGGAGGAGCAGGCUcCUC--CAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 146458 | 0.67 | 0.85182 |
Target: 5'- -----aCCUCCUCGUCCGAgucggaccucgaGGAGGa- -3' miRNA: 3'- gccucaGGAGGAGCAGGCU------------CCUCCac -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 18241 | 0.67 | 0.844333 |
Target: 5'- aGGAGaUCUCCUCGggaCGAGcGGuGGUGg -3' miRNA: 3'- gCCUCaGGAGGAGCag-GCUC-CU-CCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 119295 | 0.67 | 0.844333 |
Target: 5'- aCGGAGUUCUCgCcCGUCCagguGAGGcggauGGUGa -3' miRNA: 3'- -GCCUCAGGAG-GaGCAGG----CUCCu----CCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 7101 | 0.67 | 0.844333 |
Target: 5'- gCGGcGUCCUCCUUcuccaggCCGcuGAGGUGg -3' miRNA: 3'- -GCCuCAGGAGGAGca-----GGCucCUCCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 227769 | 0.67 | 0.836676 |
Target: 5'- uGGuucUCUUCCUCGUCgGAGGAGu-- -3' miRNA: 3'- gCCuc-AGGAGGAGCAGgCUCCUCcac -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 73499 | 0.68 | 0.812743 |
Target: 5'- -cGAGcUCCUCCUCGaCCcgGAGGAuguGGUGg -3' miRNA: 3'- gcCUC-AGGAGGAGCaGG--CUCCU---CCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 216212 | 0.68 | 0.787508 |
Target: 5'- gCGGGGUCCUCCUggcacacgcagaCGaggCCuacgagcGGGAGGUGg -3' miRNA: 3'- -GCCUCAGGAGGA------------GCa--GGc------UCCUCCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 117842 | 0.72 | 0.600673 |
Target: 5'- uCGcAGUCgUCCUCGUCCGAcGAGGa- -3' miRNA: 3'- -GCcUCAGgAGGAGCAGGCUcCUCCac -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 34071 | 0.73 | 0.543722 |
Target: 5'- uCGGGGUUgaCCUCGUgCaGGGAGGUGu -3' miRNA: 3'- -GCCUCAGgaGGAGCAgGcUCCUCCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 94353 | 0.73 | 0.534385 |
Target: 5'- uCGucGUCCUCCUCGaggUCCGAcucggacgaGGAGGUGu -3' miRNA: 3'- -GCcuCAGGAGGAGC---AGGCU---------CCUCCAC- -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 90903 | 0.75 | 0.427925 |
Target: 5'- aGGAGggcgcguuaUCgUCCUCGUCgGAGGAGGg- -3' miRNA: 3'- gCCUC---------AGgAGGAGCAGgCUCCUCCac -5' |
|||||||
14632 | 5' | -59.1 | NC_003521.1 | + | 19916 | 0.75 | 0.419617 |
Target: 5'- uGGuGUUCUCCcUGUuucCCGAGGAGGUGg -3' miRNA: 3'- gCCuCAGGAGGaGCA---GGCUCCUCCAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home