Results 81 - 88 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 187610 | 0.71 | 0.397261 |
|
Target: 5'- uGGGCaCGgCCUgccGGGCGAGcCGGGCCg -3' miRNA: 3'- -CUCG-GCaGGGgu-CCCGCUCaGCCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 223866 | 0.71 | 0.413001 |
|
Target: 5'- cGGCUGUCCCUcGGGUaccacguuGUCGGGCUc -3' miRNA: 3'- cUCGGCAGGGGuCCCGcu------CAGCCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 131037 | 0.72 | 0.324584 |
|
Target: 5'- --cCCGUCUCCuGGGCGGcGgcggCGGGCCu -3' miRNA: 3'- cucGGCAGGGGuCCCGCU-Ca---GCCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 92113 | 0.73 | 0.31129 |
|
Target: 5'- cGGGUCGgaacCCCCGGGuGCGGuUCGGGCg -3' miRNA: 3'- -CUCGGCa---GGGGUCC-CGCUcAGCCCGg -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 118225 | 0.73 | 0.27988 |
|
Target: 5'- -cGCCGUCgCCGGGGUGGucaaugccucguGUCGGGUg -3' miRNA: 3'- cuCGGCAGgGGUCCCGCU------------CAGCCCGg -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 35377 | 0.75 | 0.224699 |
|
Target: 5'- -cGCCGagUCCCCcucGGCGAGgacgCGGGCCg -3' miRNA: 3'- cuCGGC--AGGGGuc-CCGCUCa---GCCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 212687 | 0.84 | 0.055051 |
|
Target: 5'- -cGCCGUCgCCAGGGCaaggcugguGGGUCGGGCCu -3' miRNA: 3'- cuCGGCAGgGGUCCCG---------CUCAGCCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 229065 | 1.09 | 0.000986 |
|
Target: 5'- uGAGCCGUCCCCAGGGCGAGUCGGGCCc -3' miRNA: 3'- -CUCGGCAGGGGUCCCGCUCAGCCCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home