Results 81 - 88 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 169282 | 0.66 | 0.690689 |
Target: 5'- -cGUCGUCUUCGGcGGCGGGcUCGGugacgucgGCCg -3' miRNA: 3'- cuCGGCAGGGGUC-CCGCUC-AGCC--------CGG- -5' |
|||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 197837 | 0.66 | 0.690689 |
Target: 5'- cGGCCGUCUgCAggucgucgguGGGCGccGG-CGGGUCg -3' miRNA: 3'- cUCGGCAGGgGU----------CCCGC--UCaGCCCGG- -5' |
|||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 135363 | 0.66 | 0.690689 |
Target: 5'- -cGCCGUCUCCGcGGCG-GUuaucgcccgCGGGCg -3' miRNA: 3'- cuCGGCAGGGGUcCCGCuCA---------GCCCGg -5' |
|||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 149417 | 0.66 | 0.694383 |
Target: 5'- cGGUCGcCCUguGGGCcgggauuugggucggGGGUCcGGGCCc -3' miRNA: 3'- cUCGGCaGGGguCCCG---------------CUCAG-CCCGG- -5' |
|||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 119930 | 0.66 | 0.699912 |
Target: 5'- cAGCCGcCCCCGaccaccugcacGGGCGuGaugacgCGcGGCCg -3' miRNA: 3'- cUCGGCaGGGGU-----------CCCGCuCa-----GC-CCGG- -5' |
|||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 115655 | 0.66 | 0.699912 |
Target: 5'- -uGUCGgcgCCCCAGuGGCGGGUgaagaagGcGGCCa -3' miRNA: 3'- cuCGGCa--GGGGUC-CCGCUCAg------C-CCGG- -5' |
|||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 35018 | 0.66 | 0.699912 |
Target: 5'- -cGUCGUgCCCGGcGGaCGcGGUUGGGCa -3' miRNA: 3'- cuCGGCAgGGGUC-CC-GC-UCAGCCCGg -5' |
|||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 118533 | 0.66 | 0.699912 |
Target: 5'- aAGCCGggauUCCCCAc-GCGGcUUGGGCCg -3' miRNA: 3'- cUCGGC----AGGGGUccCGCUcAGCCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home