Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 223446 | 0.69 | 0.488289 |
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Target: 5'- gGAGCgGUCCCUcu--CGAGUCuGGGCCg -3' miRNA: 3'- -CUCGgCAGGGGucccGCUCAG-CCCGG- -5' |
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| 14633 | 3' | -64.2 | NC_003521.1 | + | 223665 | 0.66 | 0.653453 |
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Target: 5'- cGGCCccGUUggCCAGGGaGGGUCGGGCg -3' miRNA: 3'- cUCGG--CAGg-GGUCCCgCUCAGCCCGg -5' |
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| 14633 | 3' | -64.2 | NC_003521.1 | + | 223866 | 0.71 | 0.413001 |
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Target: 5'- cGGCUGUCCCUcGGGUaccacguuGUCGGGCUc -3' miRNA: 3'- cUCGGCAGGGGuCCCGcu------CAGCCCGG- -5' |
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| 14633 | 3' | -64.2 | NC_003521.1 | + | 224115 | 0.71 | 0.366227 |
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Target: 5'- aGAGUuccuCGUCgacgauguccaggCCguGGGcCGAGUCGGGCCa -3' miRNA: 3'- -CUCG----GCAG-------------GGguCCC-GCUCAGCCCGG- -5' |
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| 14633 | 3' | -64.2 | NC_003521.1 | + | 229065 | 1.09 | 0.000986 |
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Target: 5'- uGAGCCGUCCCCAGGGCGAGUCGGGCCc -3' miRNA: 3'- -CUCGGCAGGGGUCCCGCUCAGCCCGG- -5' |
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| 14633 | 3' | -64.2 | NC_003521.1 | + | 238414 | 0.68 | 0.550103 |
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Target: 5'- gGGGCCGcUCCCAGugcucgcGGuCGAgGUCGGGCa -3' miRNA: 3'- -CUCGGCaGGGGUC-------CC-GCU-CAGCCCGg -5' |
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| 14633 | 3' | -64.2 | NC_003521.1 | + | 238559 | 0.67 | 0.634724 |
|
Target: 5'- uGGCCGUCCUgGGGGC-AGUa--GCCg -3' miRNA: 3'- cUCGGCAGGGgUCCCGcUCAgccCGG- -5' |
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| 14633 | 3' | -64.2 | NC_003521.1 | + | 239983 | 0.68 | 0.569422 |
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Target: 5'- cAGCaGUCUUCGGGGU-AGUCGGuGCCu -3' miRNA: 3'- cUCGgCAGGGGUCCCGcUCAGCC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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