Results 81 - 88 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 35018 | 0.66 | 0.699912 |
|
Target: 5'- -cGUCGUgCCCGGcGGaCGcGGUUGGGCa -3' miRNA: 3'- cuCGGCAgGGGUC-CC-GC-UCAGCCCGg -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 26105 | 0.66 | 0.653453 |
|
Target: 5'- gGAGUCGg--CCAGGuaGAGUucggCGGGCCg -3' miRNA: 3'- -CUCGGCaggGGUCCcgCUCA----GCCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 20909 | 0.68 | 0.541884 |
|
Target: 5'- gGAGCagGUCCCCGGGGaCcGGUcucaaucgcacgCGGGUCg -3' miRNA: 3'- -CUCGg-CAGGGGUCCC-GcUCA------------GCCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 20770 | 0.68 | 0.560199 |
|
Target: 5'- -uGCUGUCCuUCcuGGCGuuggcgcuGUCGGGCCa -3' miRNA: 3'- cuCGGCAGG-GGucCCGCu-------CAGCCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 14751 | 0.68 | 0.560199 |
|
Target: 5'- cGGGCCGgCCgcggCCGGGGCGcGccuUCGuGGCCg -3' miRNA: 3'- -CUCGGCaGG----GGUCCCGCuC---AGC-CCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 6755 | 0.67 | 0.606631 |
|
Target: 5'- -cGCCGagUCCCAGGGCGuccauGGCCa -3' miRNA: 3'- cuCGGCa-GGGGUCCCGCucagcCCGG- -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 6046 | 0.66 | 0.681424 |
|
Target: 5'- aAGCCGUgCCCCAGcGGCcccgcaGGGCg -3' miRNA: 3'- cUCGGCA-GGGGUC-CCGcucag-CCCGg -5' |
|||||||
| 14633 | 3' | -64.2 | NC_003521.1 | + | 1152 | 0.7 | 0.421014 |
|
Target: 5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3' miRNA: 3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home