miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 201380 0.7 0.421014
Target:  5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3'
miRNA:   3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 155441 0.71 0.405083
Target:  5'- uGGCCGaCCCgCuGGGCGAGUCGcagcaGCCc -3'
miRNA:   3'- cUCGGCaGGG-GuCCCGCUCAGCc----CGG- -5'
14633 3' -64.2 NC_003521.1 + 35230 0.71 0.364757
Target:  5'- cGAG-CGUCCUCGGGGCGcgagacggcacagaGGUCGGGagaCa -3'
miRNA:   3'- -CUCgGCAGGGGUCCCGC--------------UCAGCCCg--G- -5'
14633 3' -64.2 NC_003521.1 + 131037 0.72 0.324584
Target:  5'- --cCCGUCUCCuGGGCGGcGgcggCGGGCCu -3'
miRNA:   3'- cucGGCAGGGGuCCCGCU-Ca---GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 112261 0.67 0.587973
Target:  5'- -cGCCGU-CCCAGGG-GAGUCacGGCg -3'
miRNA:   3'- cuCGGCAgGGGUCCCgCUCAGc-CCGg -5'
14633 3' -64.2 NC_003521.1 + 116714 0.67 0.587973
Target:  5'- -cGCCGUCCacuuccaCGGcGGUcccgGAGUCGGcGCCc -3'
miRNA:   3'- cuCGGCAGGg------GUC-CCG----CUCAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 115655 0.66 0.699912
Target:  5'- -uGUCGgcgCCCCAGuGGCGGGUgaagaagGcGGCCa -3'
miRNA:   3'- cuCGGCa--GGGGUC-CCGCUCAg------C-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 135363 0.66 0.690689
Target:  5'- -cGCCGUCUCCGcGGCG-GUuaucgcccgCGGGCg -3'
miRNA:   3'- cuCGGCAGGGGUcCCGCuCA---------GCCCGg -5'
14633 3' -64.2 NC_003521.1 + 113341 0.66 0.681424
Target:  5'- -cGCCGgggggCuUCCAGGGgGA--CGGGCCg -3'
miRNA:   3'- cuCGGCa----G-GGGUCCCgCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 215030 0.66 0.672125
Target:  5'- aGAGCCGUCUCguGaaaguGCGAca-GGGCCa -3'
miRNA:   3'- -CUCGGCAGGGguCc----CGCUcagCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 102839 0.66 0.672125
Target:  5'- cGAGaaGcgCgCCAGGGCGcccguggcguaGGUCuGGGCCg -3'
miRNA:   3'- -CUCggCa-GgGGUCCCGC-----------UCAG-CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 142770 0.66 0.6628
Target:  5'- cAG-CGUCCgCGGcGGCGucGUCGGuGCCa -3'
miRNA:   3'- cUCgGCAGGgGUC-CCGCu-CAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 39379 0.66 0.6628
Target:  5'- aGGCUGUCUgacgguaaggCGGGGCGAuGUUGGaGCCg -3'
miRNA:   3'- cUCGGCAGGg---------GUCCCGCU-CAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 206582 0.66 0.647838
Target:  5'- gGGGCCGacaggCCCCGGcuaucgcgacaugucGGCGAcccacgGUCGGGUg -3'
miRNA:   3'- -CUCGGCa----GGGGUC---------------CCGCU------CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 166065 0.66 0.644092
Target:  5'- uAGCCagcauccacUCCCgCAGGGCcauagcggGAG-CGGGCCg -3'
miRNA:   3'- cUCGGc--------AGGG-GUCCCG--------CUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 60690 0.66 0.644092
Target:  5'- cGGCCGcgcgggggaCCCgGGGGCGGcgCGGGUCg -3'
miRNA:   3'- cUCGGCa--------GGGgUCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 46870 0.66 0.643156
Target:  5'- -cGCCGUCgugggUCCAGaaGGCGAaguggguGUCGGGCa -3'
miRNA:   3'- cuCGGCAG-----GGGUC--CCGCU-------CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 238559 0.67 0.634724
Target:  5'- uGGCCGUCCUgGGGGC-AGUa--GCCg -3'
miRNA:   3'- cUCGGCAGGGgUCCCGcUCAgccCGG- -5'
14633 3' -64.2 NC_003521.1 + 101956 0.67 0.634724
Target:  5'- aGGCUGUUCUCGGGGUgcGAGaUgGGGUCc -3'
miRNA:   3'- cUCGGCAGGGGUCCCG--CUC-AgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 130280 0.67 0.624416
Target:  5'- -cGCCcUCUCCGgcuaccuGGGCGAGgccgCGGcGCCg -3'
miRNA:   3'- cuCGGcAGGGGU-------CCCGCUCa---GCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.