Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 229065 | 1.09 | 0.000986 |
Target: 5'- uGAGCCGUCCCCAGGGCGAGUCGGGCCc -3' miRNA: 3'- -CUCGGCAGGGGUCCCGCUCAGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 212687 | 0.84 | 0.055051 |
Target: 5'- -cGCCGUCgCCAGGGCaaggcugguGGGUCGGGCCu -3' miRNA: 3'- cuCGGCAGgGGUCCCG---------CUCAGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 35377 | 0.75 | 0.224699 |
Target: 5'- -cGCCGagUCCCCcucGGCGAGgacgCGGGCCg -3' miRNA: 3'- cuCGGC--AGGGGuc-CCGCUCa---GCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 118225 | 0.73 | 0.27988 |
Target: 5'- -cGCCGUCgCCGGGGUGGucaaugccucguGUCGGGUg -3' miRNA: 3'- cuCGGCAGgGGUCCCGCU------------CAGCCCGg -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 92113 | 0.73 | 0.31129 |
Target: 5'- cGGGUCGgaacCCCCGGGuGCGGuUCGGGCg -3' miRNA: 3'- -CUCGGCa---GGGGUCC-CGCUcAGCCCGg -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 131037 | 0.72 | 0.324584 |
Target: 5'- --cCCGUCUCCuGGGCGGcGgcggCGGGCCu -3' miRNA: 3'- cucGGCAGGGGuCCCGCU-Ca---GCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 35230 | 0.71 | 0.364757 |
Target: 5'- cGAG-CGUCCUCGGGGCGcgagacggcacagaGGUCGGGagaCa -3' miRNA: 3'- -CUCgGCAGGGGUCCCGC--------------UCAGCCCg--G- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 224115 | 0.71 | 0.366227 |
Target: 5'- aGAGUuccuCGUCgacgauguccaggCCguGGGcCGAGUCGGGCCa -3' miRNA: 3'- -CUCG----GCAG-------------GGguCCC-GCUCAGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 104116 | 0.71 | 0.374388 |
Target: 5'- -uGCCaGUCCUCGGcGGCGuccuGcUCGGGCCc -3' miRNA: 3'- cuCGG-CAGGGGUC-CCGCu---C-AGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 151091 | 0.71 | 0.374388 |
Target: 5'- -cGCCGaCCCCu---CGGGUCGGGCCg -3' miRNA: 3'- cuCGGCaGGGGucccGCUCAGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 196970 | 0.71 | 0.389537 |
Target: 5'- gGAGCCGg--CCGGGGCGccuGUgaCGGGCCc -3' miRNA: 3'- -CUCGGCaggGGUCCCGCu--CA--GCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 213290 | 0.71 | 0.396485 |
Target: 5'- gGAGaCCGUCuacgccaCCguGGGCGccUCGGGCCg -3' miRNA: 3'- -CUC-GGCAG-------GGguCCCGCucAGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 45722 | 0.71 | 0.397261 |
Target: 5'- cGGGgCGUCUgCGGGacGCGGGUCaGGCCg -3' miRNA: 3'- -CUCgGCAGGgGUCC--CGCUCAGcCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 187610 | 0.71 | 0.397261 |
Target: 5'- uGGGCaCGgCCUgccGGGCGAGcCGGGCCg -3' miRNA: 3'- -CUCG-GCaGGGgu-CCCGCUCaGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 155441 | 0.71 | 0.405083 |
Target: 5'- uGGCCGaCCCgCuGGGCGAGUCGcagcaGCCc -3' miRNA: 3'- cUCGGCaGGG-GuCCCGCUCAGCc----CGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 223866 | 0.71 | 0.413001 |
Target: 5'- cGGCUGUCCCUcGGGUaccacguuGUCGGGCUc -3' miRNA: 3'- cUCGGCAGGGGuCCCGcu------CAGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 1152 | 0.7 | 0.421014 |
Target: 5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3' miRNA: 3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 201380 | 0.7 | 0.421014 |
Target: 5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3' miRNA: 3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 88434 | 0.7 | 0.424245 |
Target: 5'- -uGCgCGUCUCCAGGGagacgucguccgccuCGGcGUCGGGCUg -3' miRNA: 3'- cuCG-GCAGGGGUCCC---------------GCU-CAGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 122463 | 0.7 | 0.428305 |
Target: 5'- aGAGCCGacgguucaagUCCaCCAuguccuuGGGCGGGUUcugcaGGGCCa -3' miRNA: 3'- -CUCGGC----------AGG-GGU-------CCCGCUCAG-----CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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