miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 229065 1.09 0.000986
Target:  5'- uGAGCCGUCCCCAGGGCGAGUCGGGCCc -3'
miRNA:   3'- -CUCGGCAGGGGUCCCGCUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 212687 0.84 0.055051
Target:  5'- -cGCCGUCgCCAGGGCaaggcugguGGGUCGGGCCu -3'
miRNA:   3'- cuCGGCAGgGGUCCCG---------CUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 35377 0.75 0.224699
Target:  5'- -cGCCGagUCCCCcucGGCGAGgacgCGGGCCg -3'
miRNA:   3'- cuCGGC--AGGGGuc-CCGCUCa---GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 118225 0.73 0.27988
Target:  5'- -cGCCGUCgCCGGGGUGGucaaugccucguGUCGGGUg -3'
miRNA:   3'- cuCGGCAGgGGUCCCGCU------------CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 92113 0.73 0.31129
Target:  5'- cGGGUCGgaacCCCCGGGuGCGGuUCGGGCg -3'
miRNA:   3'- -CUCGGCa---GGGGUCC-CGCUcAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 131037 0.72 0.324584
Target:  5'- --cCCGUCUCCuGGGCGGcGgcggCGGGCCu -3'
miRNA:   3'- cucGGCAGGGGuCCCGCU-Ca---GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 35230 0.71 0.364757
Target:  5'- cGAG-CGUCCUCGGGGCGcgagacggcacagaGGUCGGGagaCa -3'
miRNA:   3'- -CUCgGCAGGGGUCCCGC--------------UCAGCCCg--G- -5'
14633 3' -64.2 NC_003521.1 + 224115 0.71 0.366227
Target:  5'- aGAGUuccuCGUCgacgauguccaggCCguGGGcCGAGUCGGGCCa -3'
miRNA:   3'- -CUCG----GCAG-------------GGguCCC-GCUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 104116 0.71 0.374388
Target:  5'- -uGCCaGUCCUCGGcGGCGuccuGcUCGGGCCc -3'
miRNA:   3'- cuCGG-CAGGGGUC-CCGCu---C-AGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 151091 0.71 0.374388
Target:  5'- -cGCCGaCCCCu---CGGGUCGGGCCg -3'
miRNA:   3'- cuCGGCaGGGGucccGCUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 196970 0.71 0.389537
Target:  5'- gGAGCCGg--CCGGGGCGccuGUgaCGGGCCc -3'
miRNA:   3'- -CUCGGCaggGGUCCCGCu--CA--GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 213290 0.71 0.396485
Target:  5'- gGAGaCCGUCuacgccaCCguGGGCGccUCGGGCCg -3'
miRNA:   3'- -CUC-GGCAG-------GGguCCCGCucAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 45722 0.71 0.397261
Target:  5'- cGGGgCGUCUgCGGGacGCGGGUCaGGCCg -3'
miRNA:   3'- -CUCgGCAGGgGUCC--CGCUCAGcCCGG- -5'
14633 3' -64.2 NC_003521.1 + 187610 0.71 0.397261
Target:  5'- uGGGCaCGgCCUgccGGGCGAGcCGGGCCg -3'
miRNA:   3'- -CUCG-GCaGGGgu-CCCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 155441 0.71 0.405083
Target:  5'- uGGCCGaCCCgCuGGGCGAGUCGcagcaGCCc -3'
miRNA:   3'- cUCGGCaGGG-GuCCCGCUCAGCc----CGG- -5'
14633 3' -64.2 NC_003521.1 + 223866 0.71 0.413001
Target:  5'- cGGCUGUCCCUcGGGUaccacguuGUCGGGCUc -3'
miRNA:   3'- cUCGGCAGGGGuCCCGcu------CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 1152 0.7 0.421014
Target:  5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3'
miRNA:   3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 201380 0.7 0.421014
Target:  5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3'
miRNA:   3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 88434 0.7 0.424245
Target:  5'- -uGCgCGUCUCCAGGGagacgucguccgccuCGGcGUCGGGCUg -3'
miRNA:   3'- cuCG-GCAGGGGUCCC---------------GCU-CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 122463 0.7 0.428305
Target:  5'- aGAGCCGacgguucaagUCCaCCAuguccuuGGGCGGGUUcugcaGGGCCa -3'
miRNA:   3'- -CUCGGC----------AGG-GGU-------CCCGCUCAG-----CCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.