Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14633 | 3' | -64.2 | NC_003521.1 | + | 1152 | 0.7 | 0.421014 |
Target: 5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3' miRNA: 3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 6046 | 0.66 | 0.681424 |
Target: 5'- aAGCCGUgCCCCAGcGGCcccgcaGGGCg -3' miRNA: 3'- cUCGGCA-GGGGUC-CCGcucag-CCCGg -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 6755 | 0.67 | 0.606631 |
Target: 5'- -cGCCGagUCCCAGGGCGuccauGGCCa -3' miRNA: 3'- cuCGGCa-GGGGUCCCGCucagcCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 14751 | 0.68 | 0.560199 |
Target: 5'- cGGGCCGgCCgcggCCGGGGCGcGccuUCGuGGCCg -3' miRNA: 3'- -CUCGGCaGG----GGUCCCGCuC---AGC-CCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 20770 | 0.68 | 0.560199 |
Target: 5'- -uGCUGUCCuUCcuGGCGuuggcgcuGUCGGGCCa -3' miRNA: 3'- cuCGGCAGG-GGucCCGCu-------CAGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 20909 | 0.68 | 0.541884 |
Target: 5'- gGAGCagGUCCCCGGGGaCcGGUcucaaucgcacgCGGGUCg -3' miRNA: 3'- -CUCGg-CAGGGGUCCC-GcUCA------------GCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 26105 | 0.66 | 0.653453 |
Target: 5'- gGAGUCGg--CCAGGuaGAGUucggCGGGCCg -3' miRNA: 3'- -CUCGGCaggGGUCCcgCUCA----GCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 35018 | 0.66 | 0.699912 |
Target: 5'- -cGUCGUgCCCGGcGGaCGcGGUUGGGCa -3' miRNA: 3'- cuCGGCAgGGGUC-CC-GC-UCAGCCCGg -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 35230 | 0.71 | 0.364757 |
Target: 5'- cGAG-CGUCCUCGGGGCGcgagacggcacagaGGUCGGGagaCa -3' miRNA: 3'- -CUCgGCAGGGGUCCCGC--------------UCAGCCCg--G- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 35377 | 0.75 | 0.224699 |
Target: 5'- -cGCCGagUCCCCcucGGCGAGgacgCGGGCCg -3' miRNA: 3'- cuCGGC--AGGGGuc-CCGCUCa---GCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 38186 | 0.68 | 0.550103 |
Target: 5'- gGGGCCGcUCCCAGugcucgcGGuCGAgGUCGGGCa -3' miRNA: 3'- -CUCGGCaGGGGUC-------CC-GCU-CAGCCCGg -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 38332 | 0.67 | 0.634724 |
Target: 5'- uGGCCGUCCUgGGGGC-AGUa--GCCg -3' miRNA: 3'- cUCGGCAGGGgUCCCGcUCAgccCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 39379 | 0.66 | 0.6628 |
Target: 5'- aGGCUGUCUgacgguaaggCGGGGCGAuGUUGGaGCCg -3' miRNA: 3'- cUCGGCAGGg---------GUCCCGCU-CAGCC-CGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 44280 | 0.67 | 0.634724 |
Target: 5'- uGGGUCGgcuuucUCCCCcgggagcuGGGCGGGUUGcuguGGCCg -3' miRNA: 3'- -CUCGGC------AGGGGu-------CCCGCUCAGC----CCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 45722 | 0.71 | 0.397261 |
Target: 5'- cGGGgCGUCUgCGGGacGCGGGUCaGGCCg -3' miRNA: 3'- -CUCgGCAGGgGUCC--CGCUCAGcCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 46870 | 0.66 | 0.643156 |
Target: 5'- -cGCCGUCgugggUCCAGaaGGCGAaguggguGUCGGGCa -3' miRNA: 3'- cuCGGCAG-----GGGUC--CCGCU-------CAGCCCGg -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 47546 | 0.66 | 0.652518 |
Target: 5'- aGGUCGUCCaugucgagCGGggaagacGGCGAG-CGGGCCa -3' miRNA: 3'- cUCGGCAGGg-------GUC-------CCGCUCaGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 60690 | 0.66 | 0.644092 |
Target: 5'- cGGCCGcgcgggggaCCCgGGGGCGGcgCGGGUCg -3' miRNA: 3'- cUCGGCa--------GGGgUCCCGCUcaGCCCGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 70337 | 0.7 | 0.453976 |
Target: 5'- -cGCCGUCCagCAGGGCGuugagcuuGUCGGcgggguagaGCCg -3' miRNA: 3'- cuCGGCAGGg-GUCCCGCu-------CAGCC---------CGG- -5' |
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14633 | 3' | -64.2 | NC_003521.1 | + | 77010 | 0.66 | 0.6628 |
Target: 5'- -cGCCGUCCa-GGGGCagcaugcGGUUGaGGCCg -3' miRNA: 3'- cuCGGCAGGggUCCCGc------UCAGC-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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