miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 1152 0.7 0.421014
Target:  5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3'
miRNA:   3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 6046 0.66 0.681424
Target:  5'- aAGCCGUgCCCCAGcGGCcccgcaGGGCg -3'
miRNA:   3'- cUCGGCA-GGGGUC-CCGcucag-CCCGg -5'
14633 3' -64.2 NC_003521.1 + 6755 0.67 0.606631
Target:  5'- -cGCCGagUCCCAGGGCGuccauGGCCa -3'
miRNA:   3'- cuCGGCa-GGGGUCCCGCucagcCCGG- -5'
14633 3' -64.2 NC_003521.1 + 14751 0.68 0.560199
Target:  5'- cGGGCCGgCCgcggCCGGGGCGcGccuUCGuGGCCg -3'
miRNA:   3'- -CUCGGCaGG----GGUCCCGCuC---AGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 20770 0.68 0.560199
Target:  5'- -uGCUGUCCuUCcuGGCGuuggcgcuGUCGGGCCa -3'
miRNA:   3'- cuCGGCAGG-GGucCCGCu-------CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 20909 0.68 0.541884
Target:  5'- gGAGCagGUCCCCGGGGaCcGGUcucaaucgcacgCGGGUCg -3'
miRNA:   3'- -CUCGg-CAGGGGUCCC-GcUCA------------GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 26105 0.66 0.653453
Target:  5'- gGAGUCGg--CCAGGuaGAGUucggCGGGCCg -3'
miRNA:   3'- -CUCGGCaggGGUCCcgCUCA----GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 35018 0.66 0.699912
Target:  5'- -cGUCGUgCCCGGcGGaCGcGGUUGGGCa -3'
miRNA:   3'- cuCGGCAgGGGUC-CC-GC-UCAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 35230 0.71 0.364757
Target:  5'- cGAG-CGUCCUCGGGGCGcgagacggcacagaGGUCGGGagaCa -3'
miRNA:   3'- -CUCgGCAGGGGUCCCGC--------------UCAGCCCg--G- -5'
14633 3' -64.2 NC_003521.1 + 35377 0.75 0.224699
Target:  5'- -cGCCGagUCCCCcucGGCGAGgacgCGGGCCg -3'
miRNA:   3'- cuCGGC--AGGGGuc-CCGCUCa---GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 38186 0.68 0.550103
Target:  5'- gGGGCCGcUCCCAGugcucgcGGuCGAgGUCGGGCa -3'
miRNA:   3'- -CUCGGCaGGGGUC-------CC-GCU-CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 38332 0.67 0.634724
Target:  5'- uGGCCGUCCUgGGGGC-AGUa--GCCg -3'
miRNA:   3'- cUCGGCAGGGgUCCCGcUCAgccCGG- -5'
14633 3' -64.2 NC_003521.1 + 39379 0.66 0.6628
Target:  5'- aGGCUGUCUgacgguaaggCGGGGCGAuGUUGGaGCCg -3'
miRNA:   3'- cUCGGCAGGg---------GUCCCGCU-CAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 44280 0.67 0.634724
Target:  5'- uGGGUCGgcuuucUCCCCcgggagcuGGGCGGGUUGcuguGGCCg -3'
miRNA:   3'- -CUCGGC------AGGGGu-------CCCGCUCAGC----CCGG- -5'
14633 3' -64.2 NC_003521.1 + 45722 0.71 0.397261
Target:  5'- cGGGgCGUCUgCGGGacGCGGGUCaGGCCg -3'
miRNA:   3'- -CUCgGCAGGgGUCC--CGCUCAGcCCGG- -5'
14633 3' -64.2 NC_003521.1 + 46870 0.66 0.643156
Target:  5'- -cGCCGUCgugggUCCAGaaGGCGAaguggguGUCGGGCa -3'
miRNA:   3'- cuCGGCAG-----GGGUC--CCGCU-------CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 47546 0.66 0.652518
Target:  5'- aGGUCGUCCaugucgagCGGggaagacGGCGAG-CGGGCCa -3'
miRNA:   3'- cUCGGCAGGg-------GUC-------CCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 60690 0.66 0.644092
Target:  5'- cGGCCGcgcgggggaCCCgGGGGCGGcgCGGGUCg -3'
miRNA:   3'- cUCGGCa--------GGGgUCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 70337 0.7 0.453976
Target:  5'- -cGCCGUCCagCAGGGCGuugagcuuGUCGGcgggguagaGCCg -3'
miRNA:   3'- cuCGGCAGGg-GUCCCGCu-------CAGCC---------CGG- -5'
14633 3' -64.2 NC_003521.1 + 77010 0.66 0.6628
Target:  5'- -cGCCGUCCa-GGGGCagcaugcGGUUGaGGCCg -3'
miRNA:   3'- cuCGGCAGGggUCCCGc------UCAGC-CCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.