miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 223665 0.66 0.653453
Target:  5'- cGGCCccGUUggCCAGGGaGGGUCGGGCg -3'
miRNA:   3'- cUCGG--CAGg-GGUCCCgCUCAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 47546 0.66 0.652518
Target:  5'- aGGUCGUCCaugucgagCGGggaagacGGCGAG-CGGGCCa -3'
miRNA:   3'- cUCGGCAGGg-------GUC-------CCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 206582 0.66 0.647838
Target:  5'- gGGGCCGacaggCCCCGGcuaucgcgacaugucGGCGAcccacgGUCGGGUg -3'
miRNA:   3'- -CUCGGCa----GGGGUC---------------CCGCU------CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 169519 0.66 0.644092
Target:  5'- -cGCCG-CCCCAGGuGCuGGUgccccagGGGCCc -3'
miRNA:   3'- cuCGGCaGGGGUCC-CGcUCAg------CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 166065 0.66 0.644092
Target:  5'- uAGCCagcauccacUCCCgCAGGGCcauagcggGAG-CGGGCCg -3'
miRNA:   3'- cUCGGc--------AGGG-GUCCCG--------CUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 60690 0.66 0.644092
Target:  5'- cGGCCGcgcgggggaCCCgGGGGCGGcgCGGGUCg -3'
miRNA:   3'- cUCGGCa--------GGGgUCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 46870 0.66 0.643156
Target:  5'- -cGCCGUCgugggUCCAGaaGGCGAaguggguGUCGGGCa -3'
miRNA:   3'- cuCGGCAG-----GGGUC--CCGCU-------CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 44280 0.67 0.634724
Target:  5'- uGGGUCGgcuuucUCCCCcgggagcuGGGCGGGUUGcuguGGCCg -3'
miRNA:   3'- -CUCGGC------AGGGGu-------CCCGCUCAGC----CCGG- -5'
14633 3' -64.2 NC_003521.1 + 83554 0.67 0.634724
Target:  5'- -cGCCGUugCCCCGGaaaGGCGA--CGGGUCu -3'
miRNA:   3'- cuCGGCA--GGGGUC---CCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 238559 0.67 0.634724
Target:  5'- uGGCCGUCCUgGGGGC-AGUa--GCCg -3'
miRNA:   3'- cUCGGCAGGGgUCCCGcUCAgccCGG- -5'
14633 3' -64.2 NC_003521.1 + 38332 0.67 0.634724
Target:  5'- uGGCCGUCCUgGGGGC-AGUa--GCCg -3'
miRNA:   3'- cUCGGCAGGGgUCCCGcUCAgccCGG- -5'
14633 3' -64.2 NC_003521.1 + 101956 0.67 0.634724
Target:  5'- aGGCUGUUCUCGGGGUgcGAGaUgGGGUCc -3'
miRNA:   3'- cUCGGCAGGGGUCCCG--CUC-AgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 169465 0.67 0.625353
Target:  5'- cGGGuUCGUCgCCAGGcGCGucGUCGuuGGCCa -3'
miRNA:   3'- -CUC-GGCAGgGGUCC-CGCu-CAGC--CCGG- -5'
14633 3' -64.2 NC_003521.1 + 130280 0.67 0.624416
Target:  5'- -cGCCcUCUCCGgcuaccuGGGCGAGgccgCGGcGCCg -3'
miRNA:   3'- cuCGGcAGGGGU-------CCCGCUCa---GCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 128372 0.67 0.615987
Target:  5'- cGGGCgCGcCCaCCAGGGCcgccUGGGCCg -3'
miRNA:   3'- -CUCG-GCaGG-GGUCCCGcucaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 113977 0.67 0.606631
Target:  5'- cGAGCUGUUCCUGGcGGUGcAGUucgUGGGCg -3'
miRNA:   3'- -CUCGGCAGGGGUC-CCGC-UCA---GCCCGg -5'
14633 3' -64.2 NC_003521.1 + 6755 0.67 0.606631
Target:  5'- -cGCCGagUCCCAGGGCGuccauGGCCa -3'
miRNA:   3'- cuCGGCa-GGGGUCCCGCucagcCCGG- -5'
14633 3' -64.2 NC_003521.1 + 125746 0.67 0.597291
Target:  5'- aGGGCaggGUUUCU-GGGCGAcGUCGGGCUu -3'
miRNA:   3'- -CUCGg--CAGGGGuCCCGCU-CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 88473 0.67 0.587973
Target:  5'- cGGCCGgCCCCAGagcaGCGucGGcgCGGGCCc -3'
miRNA:   3'- cUCGGCaGGGGUCc---CGC--UCa-GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 112261 0.67 0.587973
Target:  5'- -cGCCGU-CCCAGGG-GAGUCacGGCg -3'
miRNA:   3'- cuCGGCAgGGGUCCCgCUCAGc-CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.