miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 5' -52.1 NC_003521.1 + 120592 0.66 0.994884
Target:  5'- cGCGGCCGccgGCUCcuGCCGguAGcGUCUg- -3'
miRNA:   3'- -UGCCGGC---UGAG--CGGCuuUUaCAGAac -5'
14633 5' -52.1 NC_003521.1 + 70107 0.66 0.994091
Target:  5'- cUGGCCGGCgugcCGCCGAAGGgccgCUa- -3'
miRNA:   3'- uGCCGGCUGa---GCGGCUUUUaca-GAac -5'
14633 5' -52.1 NC_003521.1 + 84924 0.66 0.99644
Target:  5'- cCGGCCuGCUCGCagggcgugcgcucgaUGAAGGUGUCc-- -3'
miRNA:   3'- uGCCGGcUGAGCG---------------GCUUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 214731 0.66 0.996211
Target:  5'- cUGGCCGACU--CCGGAGccGUCUa- -3'
miRNA:   3'- uGCCGGCUGAgcGGCUUUuaCAGAac -5'
14633 5' -52.1 NC_003521.1 + 90583 0.66 0.996211
Target:  5'- -aGGCCGACgugacgUGCuCGGAGAUGUa--- -3'
miRNA:   3'- ugCCGGCUGa-----GCG-GCUUUUACAgaac -5'
14633 5' -52.1 NC_003521.1 + 117483 0.66 0.994884
Target:  5'- cACGGCCG-CggCGCUGggGccGUCg-- -3'
miRNA:   3'- -UGCCGGCuGa-GCGGCuuUuaCAGaac -5'
14633 5' -52.1 NC_003521.1 + 23844 0.66 0.994091
Target:  5'- -aGGCCGACcUGCUGGcgcuGUGUCUc- -3'
miRNA:   3'- ugCCGGCUGaGCGGCUuu--UACAGAac -5'
14633 5' -52.1 NC_003521.1 + 109510 0.66 0.996211
Target:  5'- cACGGCCagguGACgcCGCCGAcgGUGUUc-- -3'
miRNA:   3'- -UGCCGG----CUGa-GCGGCUuuUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 117081 0.66 0.996603
Target:  5'- cCGGCCGGCcuucUCGCUGuuccccgcgcguccGGGAUGUCa-- -3'
miRNA:   3'- uGCCGGCUG----AGCGGC--------------UUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 125604 0.66 0.994091
Target:  5'- uGCGuGuCCGugUCGCCGcgGAUGcagucCUUGg -3'
miRNA:   3'- -UGC-C-GGCugAGCGGCuuUUACa----GAAC- -5'
14633 5' -52.1 NC_003521.1 + 206758 0.66 0.995588
Target:  5'- uGCcGCCGACuaUCGCCGAuuAUcGUCg-- -3'
miRNA:   3'- -UGcCGGCUG--AGCGGCUuuUA-CAGaac -5'
14633 5' -52.1 NC_003521.1 + 234453 0.66 0.996211
Target:  5'- -gGGCCGACcucCGCUcuGAGUGUCUc- -3'
miRNA:   3'- ugCCGGCUGa--GCGGcuUUUACAGAac -5'
14633 5' -52.1 NC_003521.1 + 52759 0.66 0.996211
Target:  5'- -aGGCCGcACUCGUuaaccaggaUGGAGAUGUCc-- -3'
miRNA:   3'- ugCCGGC-UGAGCG---------GCUUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 81113 0.66 0.996211
Target:  5'- gAUGGCCGAgaggaUgGCCGAAGGguUGaUCUUGc -3'
miRNA:   3'- -UGCCGGCUg----AgCGGCUUUU--AC-AGAAC- -5'
14633 5' -52.1 NC_003521.1 + 165693 0.66 0.996761
Target:  5'- -aGGUCGGC-CGCCGAAAGccGUCc-- -3'
miRNA:   3'- ugCCGGCUGaGCGGCUUUUa-CAGaac -5'
14633 5' -52.1 NC_003521.1 + 54637 0.66 0.997242
Target:  5'- cACGGCCGAguuCUCGCUcucgcgcacGAUGUCcUGg -3'
miRNA:   3'- -UGCCGGCU---GAGCGGcuu------UUACAGaAC- -5'
14633 5' -52.1 NC_003521.1 + 148646 0.66 0.997242
Target:  5'- aACGGCCccgaGCUCGgCGggGAUGg---- -3'
miRNA:   3'- -UGCCGGc---UGAGCgGCuuUUACagaac -5'
14633 5' -52.1 NC_003521.1 + 197385 0.67 0.991104
Target:  5'- -aGGCUcuGGCUCGCCGcccgggacuGGGUGUCUg- -3'
miRNA:   3'- ugCCGG--CUGAGCGGCu--------UUUACAGAac -5'
14633 5' -52.1 NC_003521.1 + 27570 0.67 0.990987
Target:  5'- gGCGGUCGACgCGUCGGAcuccgauGcgGUCUg- -3'
miRNA:   3'- -UGCCGGCUGaGCGGCUU-------UuaCAGAac -5'
14633 5' -52.1 NC_003521.1 + 103389 0.67 0.989879
Target:  5'- gGCaGCCGcgcguGCUCGCgGAAGGUGUUg-- -3'
miRNA:   3'- -UGcCGGC-----UGAGCGgCUUUUACAGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.