miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 5' -52.1 NC_003521.1 + 229099 1.09 0.010905
Target:  5'- gACGGCCGACUCGCCGAAAAUGUCUUGa -3'
miRNA:   3'- -UGCCGGCUGAGCGGCUUUUACAGAAC- -5'
14633 5' -52.1 NC_003521.1 + 75830 0.73 0.879374
Target:  5'- uGCGGCCGAuCUCGCCcucggGAAGAUGg---- -3'
miRNA:   3'- -UGCCGGCU-GAGCGG-----CUUUUACagaac -5'
14633 5' -52.1 NC_003521.1 + 161554 0.72 0.88633
Target:  5'- gACGGggugcucuucuUCGACUCGCCGGAGaacGUGUCg-- -3'
miRNA:   3'- -UGCC-----------GGCUGAGCGGCUUU---UACAGaac -5'
14633 5' -52.1 NC_003521.1 + 53170 0.71 0.917703
Target:  5'- cGCGGCCGccCUCGCCGAugaAGAUGg---- -3'
miRNA:   3'- -UGCCGGCu-GAGCGGCU---UUUACagaac -5'
14633 5' -52.1 NC_003521.1 + 165949 0.71 0.923277
Target:  5'- -aGGUCGggguGCUCGCgGAAGAUGUCg-- -3'
miRNA:   3'- ugCCGGC----UGAGCGgCUUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 140213 0.71 0.928614
Target:  5'- gGCGGCCGAgUCGCCGugcagcauGAUGgcggCUc- -3'
miRNA:   3'- -UGCCGGCUgAGCGGCuu------UUACa---GAac -5'
14633 5' -52.1 NC_003521.1 + 119355 0.71 0.938578
Target:  5'- cCGGCCuccaugGACaCGCCGggGAUGUCc-- -3'
miRNA:   3'- uGCCGG------CUGaGCGGCuuUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 172290 0.71 0.938578
Target:  5'- gGCGGCCGcuGC-CGCCGuccGGUGUCggUGg -3'
miRNA:   3'- -UGCCGGC--UGaGCGGCuu-UUACAGa-AC- -5'
14633 5' -52.1 NC_003521.1 + 118216 0.71 0.942755
Target:  5'- cGCGGCCGccGCcgUCGCCGggGuggucaaugccucGUGUCgggUGg -3'
miRNA:   3'- -UGCCGGC--UG--AGCGGCuuU-------------UACAGa--AC- -5'
14633 5' -52.1 NC_003521.1 + 55769 0.71 0.943207
Target:  5'- cGCGGCCGGCgguacaGCuCGAAGAUGaaCUUGc -3'
miRNA:   3'- -UGCCGGCUGag----CG-GCUUUUACa-GAAC- -5'
14633 5' -52.1 NC_003521.1 + 119802 0.7 0.947602
Target:  5'- -aGGUCGGCgcCGCCGAGGAgGUCUg- -3'
miRNA:   3'- ugCCGGCUGa-GCGGCUUUUaCAGAac -5'
14633 5' -52.1 NC_003521.1 + 97389 0.7 0.959416
Target:  5'- aGCGGCCaGAcCUCGCCGAAGGaGcCcUGg -3'
miRNA:   3'- -UGCCGG-CU-GAGCGGCUUUUaCaGaAC- -5'
14633 5' -52.1 NC_003521.1 + 172100 0.7 0.962908
Target:  5'- gGCGGCCGACUCGUaaaugggcagcaUGAAAcUGcUCUg- -3'
miRNA:   3'- -UGCCGGCUGAGCG------------GCUUUuAC-AGAac -5'
14633 5' -52.1 NC_003521.1 + 34223 0.69 0.966186
Target:  5'- gACGGCgccCGugUCGCCGcAGAGgaUCUUGa -3'
miRNA:   3'- -UGCCG---GCugAGCGGC-UUUUacAGAAC- -5'
14633 5' -52.1 NC_003521.1 + 50450 0.69 0.974785
Target:  5'- aGCGGUgGACggaGCCGAAAgccgcGUGUCggUGa -3'
miRNA:   3'- -UGCCGgCUGag-CGGCUUU-----UACAGa-AC- -5'
14633 5' -52.1 NC_003521.1 + 104218 0.68 0.979553
Target:  5'- uCGGCCucCUCGCaCGAGAGUGcCgagUGa -3'
miRNA:   3'- uGCCGGcuGAGCG-GCUUUUACaGa--AC- -5'
14633 5' -52.1 NC_003521.1 + 164855 0.68 0.981669
Target:  5'- -gGGCCGcucCUCGUCGggGGUGUgUa- -3'
miRNA:   3'- ugCCGGCu--GAGCGGCuuUUACAgAac -5'
14633 5' -52.1 NC_003521.1 + 172113 0.68 0.981669
Target:  5'- gGCGGCCGACggCGCC---AcgGUCaUGa -3'
miRNA:   3'- -UGCCGGCUGa-GCGGcuuUuaCAGaAC- -5'
14633 5' -52.1 NC_003521.1 + 85967 0.68 0.983616
Target:  5'- -aGGCCGcACUCGUCGAugacgauGAUGUUg-- -3'
miRNA:   3'- ugCCGGC-UGAGCGGCUu------UUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 163959 0.68 0.985403
Target:  5'- uCGGCCG-CggaCGCCGAAGAUGg---- -3'
miRNA:   3'- uGCCGGCuGa--GCGGCUUUUACagaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.