miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 1152 0.66 0.999803
Target:  5'- uGCCGUCcCCGGGagccacggcGCCgc--CUACGGg -3'
miRNA:   3'- gUGGUAGaGGCUC---------UGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 94293 0.66 0.999879
Target:  5'- cCGCCGgagggacCCGGGuggaGCCgccgUUUCUGCGGg -3'
miRNA:   3'- -GUGGUaga----GGCUC----UGGa---AAAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 100770 0.66 0.999821
Target:  5'- gCACUcgUgcaaCGAGGCCUUccugccgccauggccUUCUGCGGc -3'
miRNA:   3'- -GUGGuaGag--GCUCUGGAA---------------AAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 129653 0.66 0.99975
Target:  5'- gCGCCGUCgCCGGGgcgGCCgcgcuaUGCGGa -3'
miRNA:   3'- -GUGGUAGaGGCUC---UGGaaaag-AUGCC- -5'
14634 3' -49.5 NC_003521.1 + 5701 0.66 0.999686
Target:  5'- uCACCAUC-CCGGGGgCUgucuaucgCUAgGGg -3'
miRNA:   3'- -GUGGUAGaGGCUCUgGAaaa-----GAUgCC- -5'
14634 3' -49.5 NC_003521.1 + 30858 0.66 0.999679
Target:  5'- gGCCGuccgcggcaacuUCUCCGAacCCUUUccccgggUCUACGGu -3'
miRNA:   3'- gUGGU------------AGAGGCUcuGGAAA-------AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 11565 0.66 0.999845
Target:  5'- gCGCCGUCgugcgCCG-GAC----UCUGCGGg -3'
miRNA:   3'- -GUGGUAGa----GGCuCUGgaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 158720 0.66 0.999849
Target:  5'- aCACCGUCUuuGuGGCCUaucacgaggacagCUACGa -3'
miRNA:   3'- -GUGGUAGAggCuCUGGAaaa----------GAUGCc -5'
14634 3' -49.5 NC_003521.1 + 83594 0.66 0.999686
Target:  5'- aGCCG-CUCCuGGGCCUUgaugCaGCGGa -3'
miRNA:   3'- gUGGUaGAGGcUCUGGAAaa--GaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 201380 0.66 0.999803
Target:  5'- uGCCGUCcCCGGGagccacggcGCCgc--CUACGGg -3'
miRNA:   3'- gUGGUAGaGGCUC---------UGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 111457 0.66 0.999803
Target:  5'- --aCAUCUaCCGucGCCUg--CUACGGg -3'
miRNA:   3'- gugGUAGA-GGCucUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 94645 0.66 0.999803
Target:  5'- uGCCAgcucgaUCCGGGACCgccguaGCGGg -3'
miRNA:   3'- gUGGUag----AGGCUCUGGaaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 227161 0.66 0.99975
Target:  5'- cCACCcUCUCCGAG-CCUcUUCUcccGCc- -3'
miRNA:   3'- -GUGGuAGAGGCUCuGGAaAAGA---UGcc -5'
14634 3' -49.5 NC_003521.1 + 217628 0.66 0.99975
Target:  5'- cCGCCAUCUCCucGGCgUggUCggggggcaugGCGGg -3'
miRNA:   3'- -GUGGUAGAGGcuCUGgAaaAGa---------UGCC- -5'
14634 3' -49.5 NC_003521.1 + 65519 0.67 0.999492
Target:  5'- gCGCUGUCagcugggcgacgCCGAGACCgugUUC-ACGGg -3'
miRNA:   3'- -GUGGUAGa-----------GGCUCUGGaa-AAGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 145222 0.67 0.9994
Target:  5'- cCACCAaguUCUaCGAGGCCUUcgUgaGCGGc -3'
miRNA:   3'- -GUGGU---AGAgGCUCUGGAAa-AgaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 219827 0.67 0.999608
Target:  5'- gGCC--CUCCGAGACCcggaUCcagUGCGGg -3'
miRNA:   3'- gUGGuaGAGGCUCUGGaaa-AG---AUGCC- -5'
14634 3' -49.5 NC_003521.1 + 226924 0.67 0.9994
Target:  5'- -uCgGUCUCguCGAGACCg---CUACGGu -3'
miRNA:   3'- guGgUAGAG--GCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 16585 0.67 0.999514
Target:  5'- uCACCAUgUUCGAcagcggugugGACCgcgaCUACGGg -3'
miRNA:   3'- -GUGGUAgAGGCU----------CUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 171874 0.67 0.999514
Target:  5'- gGCCGUCUCCcGGACCagacgCUA-GGa -3'
miRNA:   3'- gUGGUAGAGGcUCUGGaaaa-GAUgCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.