Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14634 | 3' | -49.5 | NC_003521.1 | + | 1152 | 0.66 | 0.999803 |
Target: 5'- uGCCGUCcCCGGGagccacggcGCCgc--CUACGGg -3' miRNA: 3'- gUGGUAGaGGCUC---------UGGaaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 94293 | 0.66 | 0.999879 |
Target: 5'- cCGCCGgagggacCCGGGuggaGCCgccgUUUCUGCGGg -3' miRNA: 3'- -GUGGUaga----GGCUC----UGGa---AAAGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 100770 | 0.66 | 0.999821 |
Target: 5'- gCACUcgUgcaaCGAGGCCUUccugccgccauggccUUCUGCGGc -3' miRNA: 3'- -GUGGuaGag--GCUCUGGAA---------------AAGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 129653 | 0.66 | 0.99975 |
Target: 5'- gCGCCGUCgCCGGGgcgGCCgcgcuaUGCGGa -3' miRNA: 3'- -GUGGUAGaGGCUC---UGGaaaag-AUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 5701 | 0.66 | 0.999686 |
Target: 5'- uCACCAUC-CCGGGGgCUgucuaucgCUAgGGg -3' miRNA: 3'- -GUGGUAGaGGCUCUgGAaaa-----GAUgCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 30858 | 0.66 | 0.999679 |
Target: 5'- gGCCGuccgcggcaacuUCUCCGAacCCUUUccccgggUCUACGGu -3' miRNA: 3'- gUGGU------------AGAGGCUcuGGAAA-------AGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 11565 | 0.66 | 0.999845 |
Target: 5'- gCGCCGUCgugcgCCG-GAC----UCUGCGGg -3' miRNA: 3'- -GUGGUAGa----GGCuCUGgaaaAGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 158720 | 0.66 | 0.999849 |
Target: 5'- aCACCGUCUuuGuGGCCUaucacgaggacagCUACGa -3' miRNA: 3'- -GUGGUAGAggCuCUGGAaaa----------GAUGCc -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 83594 | 0.66 | 0.999686 |
Target: 5'- aGCCG-CUCCuGGGCCUUgaugCaGCGGa -3' miRNA: 3'- gUGGUaGAGGcUCUGGAAaa--GaUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 201380 | 0.66 | 0.999803 |
Target: 5'- uGCCGUCcCCGGGagccacggcGCCgc--CUACGGg -3' miRNA: 3'- gUGGUAGaGGCUC---------UGGaaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 111457 | 0.66 | 0.999803 |
Target: 5'- --aCAUCUaCCGucGCCUg--CUACGGg -3' miRNA: 3'- gugGUAGA-GGCucUGGAaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 94645 | 0.66 | 0.999803 |
Target: 5'- uGCCAgcucgaUCCGGGACCgccguaGCGGg -3' miRNA: 3'- gUGGUag----AGGCUCUGGaaaagaUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 227161 | 0.66 | 0.99975 |
Target: 5'- cCACCcUCUCCGAG-CCUcUUCUcccGCc- -3' miRNA: 3'- -GUGGuAGAGGCUCuGGAaAAGA---UGcc -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 217628 | 0.66 | 0.99975 |
Target: 5'- cCGCCAUCUCCucGGCgUggUCggggggcaugGCGGg -3' miRNA: 3'- -GUGGUAGAGGcuCUGgAaaAGa---------UGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 65519 | 0.67 | 0.999492 |
Target: 5'- gCGCUGUCagcugggcgacgCCGAGACCgugUUC-ACGGg -3' miRNA: 3'- -GUGGUAGa-----------GGCUCUGGaa-AAGaUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 145222 | 0.67 | 0.9994 |
Target: 5'- cCACCAaguUCUaCGAGGCCUUcgUgaGCGGc -3' miRNA: 3'- -GUGGU---AGAgGCUCUGGAAa-AgaUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 219827 | 0.67 | 0.999608 |
Target: 5'- gGCC--CUCCGAGACCcggaUCcagUGCGGg -3' miRNA: 3'- gUGGuaGAGGCUCUGGaaa-AG---AUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 226924 | 0.67 | 0.9994 |
Target: 5'- -uCgGUCUCguCGAGACCg---CUACGGu -3' miRNA: 3'- guGgUAGAG--GCUCUGGaaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 16585 | 0.67 | 0.999514 |
Target: 5'- uCACCAUgUUCGAcagcggugugGACCgcgaCUACGGg -3' miRNA: 3'- -GUGGUAgAGGCU----------CUGGaaaaGAUGCC- -5' |
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14634 | 3' | -49.5 | NC_003521.1 | + | 171874 | 0.67 | 0.999514 |
Target: 5'- gGCCGUCUCCcGGACCagacgCUA-GGa -3' miRNA: 3'- gUGGUAGAGGcUCUGGaaaa-GAUgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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