miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 1152 0.66 0.999803
Target:  5'- uGCCGUCcCCGGGagccacggcGCCgc--CUACGGg -3'
miRNA:   3'- gUGGUAGaGGCUC---------UGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 1380 0.69 0.996339
Target:  5'- cCGCUGUCcCCGAGcCCgcgcugCUGCGGa -3'
miRNA:   3'- -GUGGUAGaGGCUCuGGaaaa--GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 5701 0.66 0.999686
Target:  5'- uCACCAUC-CCGGGGgCUgucuaucgCUAgGGg -3'
miRNA:   3'- -GUGGUAGaGGCUCUgGAaaa-----GAUgCC- -5'
14634 3' -49.5 NC_003521.1 + 11565 0.66 0.999845
Target:  5'- gCGCCGUCgugcgCCG-GAC----UCUGCGGg -3'
miRNA:   3'- -GUGGUAGa----GGCuCUGgaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 16585 0.67 0.999514
Target:  5'- uCACCAUgUUCGAcagcggugugGACCgcgaCUACGGg -3'
miRNA:   3'- -GUGGUAgAGGCU----------CUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 17478 0.7 0.990082
Target:  5'- gGCCGcCgCCGAGGCCUggggcaccuaUCUGCGGc -3'
miRNA:   3'- gUGGUaGaGGCUCUGGAaa--------AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 18541 0.68 0.998114
Target:  5'- cCACCcggGUUUCUG-GAUCUUUcUCUGCGGu -3'
miRNA:   3'- -GUGG---UAGAGGCuCUGGAAA-AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 22502 0.68 0.99891
Target:  5'- gCACCA---CCGuGGCCacgggUUUCUGCGGu -3'
miRNA:   3'- -GUGGUagaGGCuCUGGa----AAAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 27510 0.68 0.997907
Target:  5'- gCGCCAUCcucuucaucaugaugUCCGucACCU--UCUACGGc -3'
miRNA:   3'- -GUGGUAG---------------AGGCucUGGAaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 29453 0.67 0.999608
Target:  5'- gGCCAguucaugaUCCGcGACCggcugCUGCGGg -3'
miRNA:   3'- gUGGUag------AGGCuCUGGaaaa-GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 30168 0.7 0.992392
Target:  5'- gGCCAUgCUCCGcgucuauguggGGAUCU--UCUGCGGu -3'
miRNA:   3'- gUGGUA-GAGGC-----------UCUGGAaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 30858 0.66 0.999679
Target:  5'- gGCCGuccgcggcaacuUCUCCGAacCCUUUccccgggUCUACGGu -3'
miRNA:   3'- gUGGU------------AGAGGCUcuGGAAA-------AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 40314 0.69 0.996877
Target:  5'- gCACaCA-CUCCGAuccGGCCUccgCUGCGGg -3'
miRNA:   3'- -GUG-GUaGAGGCU---CUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 48232 0.69 0.997348
Target:  5'- -uCCGUCgacgCCGAGcaGCCUgcgUUCcGCGGg -3'
miRNA:   3'- guGGUAGa---GGCUC--UGGAa--AAGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 53490 0.67 0.999514
Target:  5'- -uUCAUCacgUCGAGGCCgcugCUGCGGc -3'
miRNA:   3'- guGGUAGa--GGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 65519 0.67 0.999492
Target:  5'- gCGCUGUCagcugggcgacgCCGAGACCgugUUC-ACGGg -3'
miRNA:   3'- -GUGGUAGa-----------GGCUCUGGaa-AAGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 83594 0.66 0.999686
Target:  5'- aGCCG-CUCCuGGGCCUUgaugCaGCGGa -3'
miRNA:   3'- gUGGUaGAGGcUCUGGAAaa--GaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 83636 0.74 0.928524
Target:  5'- -cCCAcCUCCGAGACCU--UCUGCa- -3'
miRNA:   3'- guGGUaGAGGCUCUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 83878 0.7 0.992392
Target:  5'- gACCcaGUCUUCGGGugCa--UCUGCGGg -3'
miRNA:   3'- gUGG--UAGAGGCUCugGaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 84676 0.7 0.992392
Target:  5'- cCACCGUCgucggaaucgUCCGAGACgacggggUUUCUgACGGg -3'
miRNA:   3'- -GUGGUAG----------AGGCUCUGga-----AAAGA-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.