miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 53490 0.67 0.999514
Target:  5'- -uUCAUCacgUCGAGGCCgcugCUGCGGc -3'
miRNA:   3'- guGGUAGa--GGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 106377 0.68 0.998421
Target:  5'- cCGCCAUCUCCGccGCCUccUCcgucguCGGg -3'
miRNA:   3'- -GUGGUAGAGGCucUGGAaaAGau----GCC- -5'
14634 3' -49.5 NC_003521.1 + 208587 0.68 0.998421
Target:  5'- gCGCUAUCUCaCGGcGACUgagUUUGCGGc -3'
miRNA:   3'- -GUGGUAGAG-GCU-CUGGaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 148781 0.68 0.998685
Target:  5'- gGCgGUCgcgCCGAGgaGCCgcggCUGCGGa -3'
miRNA:   3'- gUGgUAGa--GGCUC--UGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 232388 0.68 0.99891
Target:  5'- cCACCGUCUCgCGcuGGCUgcgcCUGCGGc -3'
miRNA:   3'- -GUGGUAGAG-GCu-CUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 135362 0.67 0.999102
Target:  5'- gCGCCGUCUCCGcGGCggUUaUCgcccGCGGg -3'
miRNA:   3'- -GUGGUAGAGGCuCUGgaAA-AGa---UGCC- -5'
14634 3' -49.5 NC_003521.1 + 171599 0.67 0.999102
Target:  5'- -cCCGUCUCUcaGAGACCaccacagcCUGCGGu -3'
miRNA:   3'- guGGUAGAGG--CUCUGGaaaa----GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 145222 0.67 0.9994
Target:  5'- cCACCAaguUCUaCGAGGCCUUcgUgaGCGGc -3'
miRNA:   3'- -GUGGU---AGAgGCUCUGGAAa-AgaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 65519 0.67 0.999492
Target:  5'- gCGCUGUCagcugggcgacgCCGAGACCgugUUC-ACGGg -3'
miRNA:   3'- -GUGGUAGa-----------GGCUCUGGaa-AAGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 18541 0.68 0.998114
Target:  5'- cCACCcggGUUUCUG-GAUCUUUcUCUGCGGu -3'
miRNA:   3'- -GUGG---UAGAGGCuCUGGAAA-AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 155373 0.69 0.997348
Target:  5'- aCACCGUCUCUucGACCUgcccgUCUAUu- -3'
miRNA:   3'- -GUGGUAGAGGcuCUGGAaa---AGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 240541 0.69 0.996877
Target:  5'- gCACaCA-CUCCGAuccGGCCUccgCUGCGGg -3'
miRNA:   3'- -GUG-GUaGAGGCU---CUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 114414 0.75 0.905524
Target:  5'- cCGCCAUCgcgcagggCCGAGACCUgug--GCGGc -3'
miRNA:   3'- -GUGGUAGa-------GGCUCUGGAaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 83636 0.74 0.928524
Target:  5'- -cCCAcCUCCGAGACCU--UCUGCa- -3'
miRNA:   3'- guGGUaGAGGCUCUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 132476 0.74 0.947679
Target:  5'- aGCCGUCUUCgGAGACCgccgUCggcGCGGa -3'
miRNA:   3'- gUGGUAGAGG-CUCUGGaaa-AGa--UGCC- -5'
14634 3' -49.5 NC_003521.1 + 83878 0.7 0.992392
Target:  5'- gACCcaGUCUUCGGGugCa--UCUGCGGg -3'
miRNA:   3'- gUGG--UAGAGGCUCugGaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 87738 0.7 0.994252
Target:  5'- uGCCAgacgaagC-CCGAGACCag--CUGCGGa -3'
miRNA:   3'- gUGGUa------GaGGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 112000 0.7 0.994252
Target:  5'- uCGCCGUCUacgagccccaCCGGGAaaacgUUCUGCGGu -3'
miRNA:   3'- -GUGGUAGA----------GGCUCUggaa-AAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 123208 0.69 0.996339
Target:  5'- aCACCggGUCgCUGGGACCcucgCUGCGGu -3'
miRNA:   3'- -GUGG--UAGaGGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 201607 0.69 0.996339
Target:  5'- cCGCUGUCcCCGAGcCCgcgcugCUGCGGa -3'
miRNA:   3'- -GUGGUAGaGGCUCuGGaaaa--GAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.