miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 104909 0.67 0.999448
Target:  5'- gGCCGUggCCGAGGCCggcacaaagACGGg -3'
miRNA:   3'- gUGGUAgaGGCUCUGGaaaaga---UGCC- -5'
14634 3' -49.5 NC_003521.1 + 145222 0.67 0.9994
Target:  5'- cCACCAaguUCUaCGAGGCCUUcgUgaGCGGc -3'
miRNA:   3'- -GUGGU---AGAgGCUCUGGAAa-AgaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 226924 0.67 0.9994
Target:  5'- -uCgGUCUCguCGAGACCg---CUACGGu -3'
miRNA:   3'- guGgUAGAG--GCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 171599 0.67 0.999102
Target:  5'- -cCCGUCUCUcaGAGACCaccacagcCUGCGGu -3'
miRNA:   3'- guGGUAGAGG--CUCUGGaaaa----GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 135362 0.67 0.999102
Target:  5'- gCGCCGUCUCCGcGGCggUUaUCgcccGCGGg -3'
miRNA:   3'- -GUGGUAGAGGCuCUGgaAA-AGa---UGCC- -5'
14634 3' -49.5 NC_003521.1 + 163449 0.67 0.999102
Target:  5'- cCACCGUCUUCGAGcCCguggugggCUACu- -3'
miRNA:   3'- -GUGGUAGAGGCUCuGGaaaa----GAUGcc -5'
14634 3' -49.5 NC_003521.1 + 22502 0.68 0.99891
Target:  5'- gCACCA---CCGuGGCCacgggUUUCUGCGGu -3'
miRNA:   3'- -GUGGUagaGGCuCUGGa----AAAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 232388 0.68 0.99891
Target:  5'- cCACCGUCUCgCGcuGGCUgcgcCUGCGGc -3'
miRNA:   3'- -GUGGUAGAG-GCu-CUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 148781 0.68 0.998685
Target:  5'- gGCgGUCgcgCCGAGgaGCCgcggCUGCGGa -3'
miRNA:   3'- gUGgUAGa--GGCUC--UGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 106377 0.68 0.998421
Target:  5'- cCGCCAUCUCCGccGCCUccUCcgucguCGGg -3'
miRNA:   3'- -GUGGUAGAGGCucUGGAaaAGau----GCC- -5'
14634 3' -49.5 NC_003521.1 + 208587 0.68 0.998421
Target:  5'- gCGCUAUCUCaCGGcGACUgagUUUGCGGc -3'
miRNA:   3'- -GUGGUAGAG-GCU-CUGGaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 106357 0.68 0.998421
Target:  5'- gCACCAaacUCaUCCGGGugCUcUUCUACc- -3'
miRNA:   3'- -GUGGU---AG-AGGCUCugGAaAAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 124099 0.68 0.998392
Target:  5'- gCGCCGaCUCCGGGACCgccguggaaguggACGGc -3'
miRNA:   3'- -GUGGUaGAGGCUCUGGaaaaga-------UGCC- -5'
14634 3' -49.5 NC_003521.1 + 18541 0.68 0.998114
Target:  5'- cCACCcggGUUUCUG-GAUCUUUcUCUGCGGu -3'
miRNA:   3'- -GUGG---UAGAGGCuCUGGAAA-AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 27510 0.68 0.997907
Target:  5'- gCGCCAUCcucuucaucaugaugUCCGucACCU--UCUACGGc -3'
miRNA:   3'- -GUGGUAG---------------AGGCucUGGAaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 48232 0.69 0.997348
Target:  5'- -uCCGUCgacgCCGAGcaGCCUgcgUUCcGCGGg -3'
miRNA:   3'- guGGUAGa---GGCUC--UGGAa--AAGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 135010 0.69 0.997348
Target:  5'- cCACCAUCUggcugccgggcaCCGuGGCCUgcgUC-ACGGu -3'
miRNA:   3'- -GUGGUAGA------------GGCuCUGGAaa-AGaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 155373 0.69 0.997348
Target:  5'- aCACCGUCUCUucGACCUgcccgUCUAUu- -3'
miRNA:   3'- -GUGGUAGAGGcuCUGGAaa---AGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 240541 0.69 0.996877
Target:  5'- gCACaCA-CUCCGAuccGGCCUccgCUGCGGg -3'
miRNA:   3'- -GUG-GUaGAGGCU---CUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 40314 0.69 0.996877
Target:  5'- gCACaCA-CUCCGAuccGGCCUccgCUGCGGg -3'
miRNA:   3'- -GUG-GUaGAGGCU---CUGGAaaaGAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.