miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 5' -43.3 NC_003521.1 + 107470 0.66 1
Target:  5'- gACCGUGCUGAUcuccacGUCCGGc-- -3'
miRNA:   3'- aUGGCAUGAUUAuuuuu-CGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 44245 0.66 1
Target:  5'- cGCCGUGCgc---GGGAGUCCGGc-- -3'
miRNA:   3'- aUGGCAUGauuauUUUUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 124874 0.66 1
Target:  5'- cGCCGUACUGAgccgcAAGAcGCCCc---- -3'
miRNA:   3'- aUGGCAUGAUUa----UUUUuCGGGcuaaa -5'
14634 5' -43.3 NC_003521.1 + 239839 0.66 1
Target:  5'- aUGCCGUGCUcguugucGGUGgcgcGGAAGCCCa---- -3'
miRNA:   3'- -AUGGCAUGA-------UUAU----UUUUCGGGcuaaa -5'
14634 5' -43.3 NC_003521.1 + 75895 0.67 1
Target:  5'- cGCCGgag----GAGGGGCCCGGUUg -3'
miRNA:   3'- aUGGCaugauuaUUUUUCGGGCUAAa -5'
14634 5' -43.3 NC_003521.1 + 227937 0.67 1
Target:  5'- aUACCGUACcacaugguguaccUGcgGGAAGGCCCGu--- -3'
miRNA:   3'- -AUGGCAUG-------------AUuaUUUUUCGGGCuaaa -5'
14634 5' -43.3 NC_003521.1 + 48064 0.67 1
Target:  5'- gAUCGaGCUGAUGGAcGGCCCGc--- -3'
miRNA:   3'- aUGGCaUGAUUAUUUuUCGGGCuaaa -5'
14634 5' -43.3 NC_003521.1 + 115908 0.67 1
Target:  5'- cACCGUGCUGAacAcgGGCCCcGUg- -3'
miRNA:   3'- aUGGCAUGAUUauUuuUCGGGcUAaa -5'
14634 5' -43.3 NC_003521.1 + 221063 0.68 0.999999
Target:  5'- gACCGagcggugGCUGAaguGGAAGCCCGAc-- -3'
miRNA:   3'- aUGGCa------UGAUUau-UUUUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 207700 0.68 1
Target:  5'- cGgCGUGCUGG-AGAAGGCCCGc--- -3'
miRNA:   3'- aUgGCAUGAUUaUUUUUCGGGCuaaa -5'
14634 5' -43.3 NC_003521.1 + 137813 0.68 1
Target:  5'- cUACCGUACcGAUGGAgcGAGCCUcacgGGUUUc -3'
miRNA:   3'- -AUGGCAUGaUUAUUU--UUCGGG----CUAAA- -5'
14634 5' -43.3 NC_003521.1 + 120958 0.69 0.999997
Target:  5'- aACCG-ACUGcgGAccGAGGCCCGGg-- -3'
miRNA:   3'- aUGGCaUGAUuaUU--UUUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 101930 0.69 0.999998
Target:  5'- gGCCGUGgUGGUAGAu-GCCCGu--- -3'
miRNA:   3'- aUGGCAUgAUUAUUUuuCGGGCuaaa -5'
14634 5' -43.3 NC_003521.1 + 39902 0.69 0.999997
Target:  5'- gGCCG-ACUGcgGGAAGGCgCGAUg- -3'
miRNA:   3'- aUGGCaUGAUuaUUUUUCGgGCUAaa -5'
14634 5' -43.3 NC_003521.1 + 98939 0.69 0.999996
Target:  5'- gGCCGUGCgcaucacacuGAGGGCCUGGUg- -3'
miRNA:   3'- aUGGCAUGauuau-----UUUUCGGGCUAaa -5'
14634 5' -43.3 NC_003521.1 + 117700 0.69 0.999999
Target:  5'- cUGCCGUACUucGUAcagcGGCCCGGc-- -3'
miRNA:   3'- -AUGGCAUGAu-UAUuuu-UCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 211559 0.7 0.99998
Target:  5'- -cCCGUACUcAUGAAGAGCgCUGGUc- -3'
miRNA:   3'- auGGCAUGAuUAUUUUUCG-GGCUAaa -5'
14634 5' -43.3 NC_003521.1 + 148464 0.71 0.999949
Target:  5'- --gCGUGCUGAUGAcgaAAAGCCCGc--- -3'
miRNA:   3'- augGCAUGAUUAUU---UUUCGGGCuaaa -5'
14634 5' -43.3 NC_003521.1 + 204834 0.71 0.999931
Target:  5'- cGCCGUcGCUGAcc--AAGCCCGGUUc -3'
miRNA:   3'- aUGGCA-UGAUUauuuUUCGGGCUAAa -5'
14634 5' -43.3 NC_003521.1 + 87270 0.71 0.999949
Target:  5'- cGCCGUGCgcGUGGccaacGGGCCCGAg-- -3'
miRNA:   3'- aUGGCAUGauUAUUu----UUCGGGCUaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.