miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 5' -43.3 NC_003521.1 + 232034 1.04 0.122903
Target:  5'- uUACCGUACUAAUAAAAAGCCCGAUUUu -3'
miRNA:   3'- -AUGGCAUGAUUAUUUUUCGGGCUAAA- -5'
14634 5' -43.3 NC_003521.1 + 128660 0.74 0.998966
Target:  5'- cACCGUcuccuuGCUGAUGA--GGCCCGAg-- -3'
miRNA:   3'- aUGGCA------UGAUUAUUuuUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 233651 0.74 0.998966
Target:  5'- cGCCGUACUG-----GAGCUCGAUUa -3'
miRNA:   3'- aUGGCAUGAUuauuuUUCGGGCUAAa -5'
14634 5' -43.3 NC_003521.1 + 93638 0.73 0.999326
Target:  5'- cGCCGccGCUAGUGGGGGGUCCGGg-- -3'
miRNA:   3'- aUGGCa-UGAUUAUUUUUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 102471 0.73 0.999326
Target:  5'- gACCGUguGCUua-GAGAGGCCCGAg-- -3'
miRNA:   3'- aUGGCA--UGAuuaUUUUUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 62225 0.72 0.999795
Target:  5'- cGCCGUGCUGcagGAGGGcGCCCGGc-- -3'
miRNA:   3'- aUGGCAUGAUua-UUUUU-CGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 79129 0.72 0.999842
Target:  5'- cGCCGUACUcgcAGUAAAAGuagguacgcuGCCCGAa-- -3'
miRNA:   3'- aUGGCAUGA---UUAUUUUU----------CGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 39226 0.72 0.999879
Target:  5'- aGCCGcgcaGCUGGUAAucgucGGAGCCCGAg-- -3'
miRNA:   3'- aUGGCa---UGAUUAUU-----UUUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 84863 0.72 0.999879
Target:  5'- cACCGUAC-GGUAGAAGgccGCCCGGUc- -3'
miRNA:   3'- aUGGCAUGaUUAUUUUU---CGGGCUAaa -5'
14634 5' -43.3 NC_003521.1 + 3144 0.72 0.999909
Target:  5'- gUACCGUACUAcgAuaccacuGCCCGAc-- -3'
miRNA:   3'- -AUGGCAUGAUuaUuuuu---CGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 204834 0.71 0.999931
Target:  5'- cGCCGUcGCUGAcc--AAGCCCGGUUc -3'
miRNA:   3'- aUGGCA-UGAUUauuuUUCGGGCUAAa -5'
14634 5' -43.3 NC_003521.1 + 87270 0.71 0.999949
Target:  5'- cGCCGUGCgcGUGGccaacGGGCCCGAg-- -3'
miRNA:   3'- aUGGCAUGauUAUUu----UUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 93745 0.71 0.999949
Target:  5'- aGCCGUcgGCcGAUAcGAAGCCCGGc-- -3'
miRNA:   3'- aUGGCA--UGaUUAUuUUUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 148464 0.71 0.999949
Target:  5'- --gCGUGCUGAUGAcgaAAAGCCCGc--- -3'
miRNA:   3'- augGCAUGAUUAUU---UUUCGGGCuaaa -5'
14634 5' -43.3 NC_003521.1 + 211559 0.7 0.99998
Target:  5'- -cCCGUACUcAUGAAGAGCgCUGGUc- -3'
miRNA:   3'- auGGCAUGAuUAUUUUUCG-GGCUAaa -5'
14634 5' -43.3 NC_003521.1 + 98939 0.69 0.999996
Target:  5'- gGCCGUGCgcaucacacuGAGGGCCUGGUg- -3'
miRNA:   3'- aUGGCAUGauuau-----UUUUCGGGCUAaa -5'
14634 5' -43.3 NC_003521.1 + 120958 0.69 0.999997
Target:  5'- aACCG-ACUGcgGAccGAGGCCCGGg-- -3'
miRNA:   3'- aUGGCaUGAUuaUU--UUUCGGGCUaaa -5'
14634 5' -43.3 NC_003521.1 + 39902 0.69 0.999997
Target:  5'- gGCCG-ACUGcgGGAAGGCgCGAUg- -3'
miRNA:   3'- aUGGCaUGAUuaUUUUUCGgGCUAaa -5'
14634 5' -43.3 NC_003521.1 + 101930 0.69 0.999998
Target:  5'- gGCCGUGgUGGUAGAu-GCCCGu--- -3'
miRNA:   3'- aUGGCAUgAUUAUUUuuCGGGCuaaa -5'
14634 5' -43.3 NC_003521.1 + 221063 0.68 0.999999
Target:  5'- gACCGagcggugGCUGAaguGGAAGCCCGAc-- -3'
miRNA:   3'- aUGGCa------UGAUUau-UUUUCGGGCUaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.