Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14634 | 5' | -43.3 | NC_003521.1 | + | 204834 | 0.71 | 0.999931 |
Target: 5'- cGCCGUcGCUGAcc--AAGCCCGGUUc -3' miRNA: 3'- aUGGCA-UGAUUauuuUUCGGGCUAAa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 3144 | 0.72 | 0.999909 |
Target: 5'- gUACCGUACUAcgAuaccacuGCCCGAc-- -3' miRNA: 3'- -AUGGCAUGAUuaUuuuu---CGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 84863 | 0.72 | 0.999879 |
Target: 5'- cACCGUAC-GGUAGAAGgccGCCCGGUc- -3' miRNA: 3'- aUGGCAUGaUUAUUUUU---CGGGCUAaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 39226 | 0.72 | 0.999879 |
Target: 5'- aGCCGcgcaGCUGGUAAucgucGGAGCCCGAg-- -3' miRNA: 3'- aUGGCa---UGAUUAUU-----UUUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 79129 | 0.72 | 0.999842 |
Target: 5'- cGCCGUACUcgcAGUAAAAGuagguacgcuGCCCGAa-- -3' miRNA: 3'- aUGGCAUGA---UUAUUUUU----------CGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 62225 | 0.72 | 0.999795 |
Target: 5'- cGCCGUGCUGcagGAGGGcGCCCGGc-- -3' miRNA: 3'- aUGGCAUGAUua-UUUUU-CGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 102471 | 0.73 | 0.999326 |
Target: 5'- gACCGUguGCUua-GAGAGGCCCGAg-- -3' miRNA: 3'- aUGGCA--UGAuuaUUUUUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 93638 | 0.73 | 0.999326 |
Target: 5'- cGCCGccGCUAGUGGGGGGUCCGGg-- -3' miRNA: 3'- aUGGCa-UGAUUAUUUUUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 233651 | 0.74 | 0.998966 |
Target: 5'- cGCCGUACUG-----GAGCUCGAUUa -3' miRNA: 3'- aUGGCAUGAUuauuuUUCGGGCUAAa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 128660 | 0.74 | 0.998966 |
Target: 5'- cACCGUcuccuuGCUGAUGA--GGCCCGAg-- -3' miRNA: 3'- aUGGCA------UGAUUAUUuuUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 232034 | 1.04 | 0.122903 |
Target: 5'- uUACCGUACUAAUAAAAAGCCCGAUUUu -3' miRNA: 3'- -AUGGCAUGAUUAUUUUUCGGGCUAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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