Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14635 | 3' | -57.1 | NC_003521.1 | + | 202427 | 0.66 | 0.947309 |
Target: 5'- --uCGGGGaACGGa-CGGCCggCCCUACg -3' miRNA: 3'- cuuGUCCC-UGCCaaGCUGGa-GGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 45320 | 0.67 | 0.912883 |
Target: 5'- cGAGCuGGccGACGGcuaCGACCUCUUCGCc -3' miRNA: 3'- -CUUGuCC--CUGCCaa-GCUGGAGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 187835 | 0.67 | 0.918463 |
Target: 5'- -cGCAGGGcguuGCGGa-CGGCCUUCCuCACc -3' miRNA: 3'- cuUGUCCC----UGCCaaGCUGGAGGG-GUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 217611 | 0.66 | 0.928961 |
Target: 5'- cAGCAGGGGCGucUCGGCCgccaucUCCUCGg -3' miRNA: 3'- cUUGUCCCUGCcaAGCUGG------AGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 4121 | 0.66 | 0.928961 |
Target: 5'- gGAAUAGGGugggauacgggaGCGGgccggCGGCuCUCCCCu- -3' miRNA: 3'- -CUUGUCCC------------UGCCaa---GCUG-GAGGGGug -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 215334 | 0.66 | 0.933396 |
Target: 5'- aGAGCAgcaccgacaccuuGGGugGGUggGACUUCUCgGCg -3' miRNA: 3'- -CUUGU-------------CCCugCCAagCUGGAGGGgUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 111149 | 0.66 | 0.933878 |
Target: 5'- gGGGCcacGGGACGGUccgcauagcgCGGCCgCCCCGg -3' miRNA: 3'- -CUUGu--CCCUGCCAa---------GCUGGaGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 228916 | 0.66 | 0.938574 |
Target: 5'- ---gGGGGAC---UCGAUCUCCuCCACg -3' miRNA: 3'- cuugUCCCUGccaAGCUGGAGG-GGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 133229 | 0.66 | 0.943051 |
Target: 5'- --uCAGGGGCGauggcggucgaGgaCGACCUCCuCUACg -3' miRNA: 3'- cuuGUCCCUGC-----------CaaGCUGGAGG-GGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 46452 | 0.67 | 0.907084 |
Target: 5'- -uGCGGGGGCuGG-UCGGCCUCgUCGu -3' miRNA: 3'- cuUGUCCCUG-CCaAGCUGGAGgGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 167411 | 0.67 | 0.887735 |
Target: 5'- ---uGGGGGCGcUUCGGcugcuguCCUCCCCAUc -3' miRNA: 3'- cuugUCCCUGCcAAGCU-------GGAGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 83763 | 0.68 | 0.860565 |
Target: 5'- gGGACAGGGugGcggCG-CC-CCCCGCc -3' miRNA: 3'- -CUUGUCCCugCcaaGCuGGaGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 10500 | 0.74 | 0.566877 |
Target: 5'- cGGCGGGGAUGGcgUGGCC-CCCCAg -3' miRNA: 3'- cUUGUCCCUGCCaaGCUGGaGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 167833 | 0.73 | 0.635461 |
Target: 5'- aGAGCAGGaGCGGccaGGCC-CCCCGCg -3' miRNA: 3'- -CUUGUCCcUGCCaagCUGGaGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 223494 | 0.71 | 0.723056 |
Target: 5'- gGAGguGGGGCGGaUCGGCgaCUUCUCACa -3' miRNA: 3'- -CUUguCCCUGCCaAGCUG--GAGGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 18258 | 0.7 | 0.76956 |
Target: 5'- cGAGCGGuGGugGG---GACCUgCCCGCg -3' miRNA: 3'- -CUUGUC-CCugCCaagCUGGAgGGGUG- -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 112801 | 0.7 | 0.778553 |
Target: 5'- cGGGCAcgcgcucuGGGACGGccgCGACC-CCCCGg -3' miRNA: 3'- -CUUGU--------CCCUGCCaa-GCUGGaGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 152468 | 0.69 | 0.813235 |
Target: 5'- -cAUAGGcGGCGGccaCGAUCUCCCCGa -3' miRNA: 3'- cuUGUCC-CUGCCaa-GCUGGAGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 89775 | 0.69 | 0.819068 |
Target: 5'- -cACAGGGACGGcgcuuucaacgCGACCacgcgguUCCCCGa -3' miRNA: 3'- cuUGUCCCUGCCaa---------GCUGG-------AGGGGUg -5' |
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14635 | 3' | -57.1 | NC_003521.1 | + | 29284 | 0.69 | 0.829694 |
Target: 5'- -uACGGGGGCGcucUUCGACUUCCUaCGCu -3' miRNA: 3'- cuUGUCCCUGCc--AAGCUGGAGGG-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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