miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14635 5' -49.8 NC_003521.1 + 233911 1.16 0.007314
Target:  5'- cCCAUCAGAAGAGAUACCACCCCUUGCg -3'
miRNA:   3'- -GGUAGUCUUCUCUAUGGUGGGGAACG- -5'
14635 5' -49.8 NC_003521.1 + 98994 0.79 0.74129
Target:  5'- gCGUCAGggGAGGUACCGCggucgUCUUGUa -3'
miRNA:   3'- gGUAGUCuuCUCUAUGGUGg----GGAACG- -5'
14635 5' -49.8 NC_003521.1 + 783 0.74 0.929363
Target:  5'- gCCAUCGGcGGAGG-ACCGCCCg--GCg -3'
miRNA:   3'- -GGUAGUCuUCUCUaUGGUGGGgaaCG- -5'
14635 5' -49.8 NC_003521.1 + 201010 0.74 0.929363
Target:  5'- gCCAUCGGcGGAGG-ACCGCCCg--GCg -3'
miRNA:   3'- -GGUAGUCuUCUCUaUGGUGGGgaaCG- -5'
14635 5' -49.8 NC_003521.1 + 50460 0.74 0.934492
Target:  5'- aCGUCGGAggagacGGAGAUGCUGCCCg--GCg -3'
miRNA:   3'- gGUAGUCU------UCUCUAUGGUGGGgaaCG- -5'
14635 5' -49.8 NC_003521.1 + 158818 0.73 0.956536
Target:  5'- aCCGUCA-AGGAGcaGUACCACaCCCgcgGCa -3'
miRNA:   3'- -GGUAGUcUUCUC--UAUGGUG-GGGaa-CG- -5'
14635 5' -49.8 NC_003521.1 + 216847 0.71 0.977983
Target:  5'- uCCAUCAGAuGGuGAcgcacACCACCUCUgcggGCg -3'
miRNA:   3'- -GGUAGUCU-UCuCUa----UGGUGGGGAa---CG- -5'
14635 5' -49.8 NC_003521.1 + 235642 0.71 0.984249
Target:  5'- -aGUUGGGAGGGGUgcacccucGCCGCCCCUUuCg -3'
miRNA:   3'- ggUAGUCUUCUCUA--------UGGUGGGGAAcG- -5'
14635 5' -49.8 NC_003521.1 + 72507 0.71 0.984249
Target:  5'- aCAUCuucGAGGAGGUGgCGCgCCUcaUGCg -3'
miRNA:   3'- gGUAGu--CUUCUCUAUgGUGgGGA--ACG- -5'
14635 5' -49.8 NC_003521.1 + 123401 0.7 0.986003
Target:  5'- gCCGcgCGGAcccGAGAUGCCGCCCUccacccggUGCc -3'
miRNA:   3'- -GGUa-GUCUu--CUCUAUGGUGGGGa-------ACG- -5'
14635 5' -49.8 NC_003521.1 + 139661 0.7 0.991567
Target:  5'- gCCGUCuGAGGAGAgggacgcagACCGCgCCgcGCu -3'
miRNA:   3'- -GGUAGuCUUCUCUa--------UGGUGgGGaaCG- -5'
14635 5' -49.8 NC_003521.1 + 88394 0.69 0.992638
Target:  5'- aCGUCGGGcacguAGAG--GCCGCgCUCUUGCa -3'
miRNA:   3'- gGUAGUCU-----UCUCuaUGGUG-GGGAACG- -5'
14635 5' -49.8 NC_003521.1 + 150177 0.69 0.992638
Target:  5'- uCCAcUAGggGguguaccuAGGUACCGCCCCUccgggGUa -3'
miRNA:   3'- -GGUaGUCuuC--------UCUAUGGUGGGGAa----CG- -5'
14635 5' -49.8 NC_003521.1 + 90559 0.69 0.993598
Target:  5'- aCC-UgGGAGGAGuggGUACCGCCCCcuagGUa -3'
miRNA:   3'- -GGuAgUCUUCUC---UAUGGUGGGGaa--CG- -5'
14635 5' -49.8 NC_003521.1 + 39618 0.69 0.994997
Target:  5'- cCCAgCGGGAGcAGAccgccggccucucgUugCGCCCaCUUGCg -3'
miRNA:   3'- -GGUaGUCUUC-UCU--------------AugGUGGG-GAACG- -5'
14635 5' -49.8 NC_003521.1 + 239845 0.69 0.994997
Target:  5'- cCCAgCGGGAGcAGAccgccggccucucgUugCGCCCaCUUGCg -3'
miRNA:   3'- -GGUaGUCUUC-UCU--------------AugGUGGG-GAACG- -5'
14635 5' -49.8 NC_003521.1 + 169050 0.69 0.995216
Target:  5'- gUCGUCcGggGGGAUGCgCAagagaCCCUucUGCg -3'
miRNA:   3'- -GGUAGuCuuCUCUAUG-GUg----GGGA--ACG- -5'
14635 5' -49.8 NC_003521.1 + 149233 0.69 0.99589
Target:  5'- cCCAUCGGcaccucGuGAcccacacACCGCCCCUUGUg -3'
miRNA:   3'- -GGUAGUCuu----CuCUa------UGGUGGGGAACG- -5'
14635 5' -49.8 NC_003521.1 + 71270 0.68 0.997007
Target:  5'- aCAUCGGcGGAGGcggggGCCgcggcacggGCCCCUgggGCa -3'
miRNA:   3'- gGUAGUCuUCUCUa----UGG---------UGGGGAa--CG- -5'
14635 5' -49.8 NC_003521.1 + 75808 0.68 0.997007
Target:  5'- aCCAUgCuGAGGA---ACCugUCCUUGCg -3'
miRNA:   3'- -GGUA-GuCUUCUcuaUGGugGGGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.