miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 3' -57 NC_003521.1 + 111828 0.66 0.933046
Target:  5'- -gCGAGAUCUGGaGCGugGuGCCCAGc -3'
miRNA:   3'- caGCUCUAGGUCcUGCugCcUGGGUU- -5'
14636 3' -57 NC_003521.1 + 52220 0.66 0.928066
Target:  5'- -aCGGGggCCgguAGGGCGGCGGGCUa-- -3'
miRNA:   3'- caGCUCuaGG---UCCUGCUGCCUGGguu -5'
14636 3' -57 NC_003521.1 + 103050 0.66 0.922862
Target:  5'- --aGAGuUCCAGGGCGugACGGAagagcuCCCAGa -3'
miRNA:   3'- cagCUCuAGGUCCUGC--UGCCU------GGGUU- -5'
14636 3' -57 NC_003521.1 + 48684 0.66 0.937803
Target:  5'- -aCGuGGAUCCGcGGAcgcCGACGGAgCCGAc -3'
miRNA:   3'- caGC-UCUAGGU-CCU---GCUGCCUgGGUU- -5'
14636 3' -57 NC_003521.1 + 52307 0.66 0.931575
Target:  5'- cGUgGGGcccgCCGGccuccucguaucucGGCGGCGGACCCAGg -3'
miRNA:   3'- -CAgCUCua--GGUC--------------CUGCUGCCUGGGUU- -5'
14636 3' -57 NC_003521.1 + 187516 0.66 0.932558
Target:  5'- -aCGAGAcggcuccUCCGGGACGACcgauaaugaGcGGCCCGu -3'
miRNA:   3'- caGCUCU-------AGGUCCUGCUG---------C-CUGGGUu -5'
14636 3' -57 NC_003521.1 + 94189 0.66 0.937338
Target:  5'- cGUCGuGG-CCGGGgcccuugaagacgACGACGGGCUCGu -3'
miRNA:   3'- -CAGCuCUaGGUCC-------------UGCUGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 148511 0.67 0.885002
Target:  5'- -aUGGGAUCCGGGACGGgGGugggggaggguuuuACCUGAc -3'
miRNA:   3'- caGCUCUAGGUCCUGCUgCC--------------UGGGUU- -5'
14636 3' -57 NC_003521.1 + 230420 0.67 0.886999
Target:  5'- uUUGAGAUgCGGGGCGacGCGGuAUCCAu -3'
miRNA:   3'- cAGCUCUAgGUCCUGC--UGCC-UGGGUu -5'
14636 3' -57 NC_003521.1 + 16784 0.67 0.886999
Target:  5'- --aGAG-UCCcaGGGGCGACGGcGCCCGc -3'
miRNA:   3'- cagCUCuAGG--UCCUGCUGCC-UGGGUu -5'
14636 3' -57 NC_003521.1 + 33665 0.67 0.917436
Target:  5'- -gCGGGAUCCAGcGAcCGGcCGuGGCCCGc -3'
miRNA:   3'- caGCUCUAGGUC-CU-GCU-GC-CUGGGUu -5'
14636 3' -57 NC_003521.1 + 103225 0.67 0.911786
Target:  5'- gGUCGccggCCAGG-CGGCGG-CCCAAg -3'
miRNA:   3'- -CAGCucuaGGUCCuGCUGCCuGGGUU- -5'
14636 3' -57 NC_003521.1 + 41627 0.67 0.899826
Target:  5'- -cCGuGGUCUGGGGCGugGcGCCCGu -3'
miRNA:   3'- caGCuCUAGGUCCUGCugCcUGGGUu -5'
14636 3' -57 NC_003521.1 + 229064 0.68 0.880268
Target:  5'- -aUGAGccguccCCAGGGCGAguCGGGCCCGu -3'
miRNA:   3'- caGCUCua----GGUCCUGCU--GCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 173333 0.68 0.880268
Target:  5'- -aCGAGGU-CGGGAgUGACGGACCUc- -3'
miRNA:   3'- caGCUCUAgGUCCU-GCUGCCUGGGuu -5'
14636 3' -57 NC_003521.1 + 73890 0.68 0.858858
Target:  5'- -cCGAGAUCCgcaAGGcCGugGGcCCCGu -3'
miRNA:   3'- caGCUCUAGG---UCCuGCugCCuGGGUu -5'
14636 3' -57 NC_003521.1 + 143161 0.68 0.858858
Target:  5'- cUCGAcGAUCCcguGGGgGuCGGACCCGg -3'
miRNA:   3'- cAGCU-CUAGGu--CCUgCuGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 79064 0.68 0.858858
Target:  5'- --gGGGGUCCGGGGCu-CGGGCaCCAGc -3'
miRNA:   3'- cagCUCUAGGUCCUGcuGCCUG-GGUU- -5'
14636 3' -57 NC_003521.1 + 99317 0.68 0.843618
Target:  5'- ---cAGGUCCGGGACGagGCGGGCCa-- -3'
miRNA:   3'- cagcUCUAGGUCCUGC--UGCCUGGguu -5'
14636 3' -57 NC_003521.1 + 176465 0.68 0.873332
Target:  5'- cUCGGGcauGUCCAGGGCGcccaGGGCCUg- -3'
miRNA:   3'- cAGCUC---UAGGUCCUGCug--CCUGGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.