Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14636 | 3' | -57 | NC_003521.1 | + | 73890 | 0.68 | 0.858858 |
Target: 5'- -cCGAGAUCCgcaAGGcCGugGGcCCCGu -3' miRNA: 3'- caGCUCUAGG---UCCuGCugCCuGGGUu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 122050 | 0.68 | 0.85133 |
Target: 5'- -gCGAGAUgCAGGGCGACGuGCgCAc -3' miRNA: 3'- caGCUCUAgGUCCUGCUGCcUGgGUu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 99317 | 0.68 | 0.843618 |
Target: 5'- ---cAGGUCCGGGACGagGCGGGCCa-- -3' miRNA: 3'- cagcUCUAGGUCCUGC--UGCCUGGguu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 188511 | 0.69 | 0.82766 |
Target: 5'- -cCGAGAUaCgAGGAggcCGGCGGGCCCc- -3' miRNA: 3'- caGCUCUA-GgUCCU---GCUGCCUGGGuu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 214811 | 0.69 | 0.826845 |
Target: 5'- cGUCGGGcgCCGGGcgcggcgACGGCGGuuCCAu -3' miRNA: 3'- -CAGCUCuaGGUCC-------UGCUGCCugGGUu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 91856 | 0.69 | 0.819429 |
Target: 5'- ------cUCCAGGGCGGCGGACCa-- -3' miRNA: 3'- cagcucuAGGUCCUGCUGCCUGGguu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 4262 | 0.69 | 0.811039 |
Target: 5'- -aCGAGA---AGGACGGCGGAgCCGAc -3' miRNA: 3'- caGCUCUaggUCCUGCUGCCUgGGUU- -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 147156 | 0.7 | 0.797302 |
Target: 5'- -cCGGGGUCCGGGACaGGggaauuuuggcaaccCGGACCCc- -3' miRNA: 3'- caGCUCUAGGUCCUG-CU---------------GCCUGGGuu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 102303 | 0.7 | 0.776037 |
Target: 5'- aGUCGAGGUgCGccGGACccaGCGGGCCCGu -3' miRNA: 3'- -CAGCUCUAgGU--CCUGc--UGCCUGGGUu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 31946 | 0.7 | 0.757783 |
Target: 5'- cUCGGGGUCCAGGAacaGGCacauGGugCCGu -3' miRNA: 3'- cAGCUCUAGGUCCUg--CUG----CCugGGUu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 122725 | 0.71 | 0.729644 |
Target: 5'- gGUCGuGGUCguGGGCGACGGcGCCg-- -3' miRNA: 3'- -CAGCuCUAGguCCUGCUGCC-UGGguu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 15251 | 0.71 | 0.729644 |
Target: 5'- -cCGAGcgCCAGGACGAcaCGGGuCCCc- -3' miRNA: 3'- caGCUCuaGGUCCUGCU--GCCU-GGGuu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 194640 | 0.71 | 0.716256 |
Target: 5'- uUUGAGcuguccuuccgcuUCCAGGACGACGaGCCCGAg -3' miRNA: 3'- cAGCUCu------------AGGUCCUGCUGCcUGGGUU- -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 196967 | 0.71 | 0.710476 |
Target: 5'- -cCGGGAgccggCCGGGGCgccuguGACGGGCCCGc -3' miRNA: 3'- caGCUCUa----GGUCCUG------CUGCCUGGGUu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 5913 | 0.71 | 0.710476 |
Target: 5'- --gGAGGUCCGcGuGACcuGACGGACCCGAg -3' miRNA: 3'- cagCUCUAGGU-C-CUG--CUGCCUGGGUU- -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 113343 | 0.71 | 0.700795 |
Target: 5'- -cCGGGGggcuUCCAGGGgGACGGGCCgGGg -3' miRNA: 3'- caGCUCU----AGGUCCUgCUGCCUGGgUU- -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 87091 | 0.72 | 0.671461 |
Target: 5'- gGUUGAGGUCCAGGuugaaggccuGCGugGcGCCCAc -3' miRNA: 3'- -CAGCUCUAGGUCC----------UGCugCcUGGGUu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 59866 | 0.73 | 0.592464 |
Target: 5'- gGUgGAGAUCCAGGACcccGCGGACUa-- -3' miRNA: 3'- -CAgCUCUAGGUCCUGc--UGCCUGGguu -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 70030 | 0.74 | 0.543738 |
Target: 5'- uUgGGGAUCCaacGGGACGugGGGCgCCAAg -3' miRNA: 3'- cAgCUCUAGG---UCCUGCugCCUG-GGUU- -5' |
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14636 | 3' | -57 | NC_003521.1 | + | 91912 | 0.74 | 0.531269 |
Target: 5'- -cCG-GAUCCAGGACGGCGGcggcgaugcgguggACCCGg -3' miRNA: 3'- caGCuCUAGGUCCUGCUGCC--------------UGGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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