miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 3' -57 NC_003521.1 + 73890 0.68 0.858858
Target:  5'- -cCGAGAUCCgcaAGGcCGugGGcCCCGu -3'
miRNA:   3'- caGCUCUAGG---UCCuGCugCCuGGGUu -5'
14636 3' -57 NC_003521.1 + 122050 0.68 0.85133
Target:  5'- -gCGAGAUgCAGGGCGACGuGCgCAc -3'
miRNA:   3'- caGCUCUAgGUCCUGCUGCcUGgGUu -5'
14636 3' -57 NC_003521.1 + 99317 0.68 0.843618
Target:  5'- ---cAGGUCCGGGACGagGCGGGCCa-- -3'
miRNA:   3'- cagcUCUAGGUCCUGC--UGCCUGGguu -5'
14636 3' -57 NC_003521.1 + 188511 0.69 0.82766
Target:  5'- -cCGAGAUaCgAGGAggcCGGCGGGCCCc- -3'
miRNA:   3'- caGCUCUA-GgUCCU---GCUGCCUGGGuu -5'
14636 3' -57 NC_003521.1 + 214811 0.69 0.826845
Target:  5'- cGUCGGGcgCCGGGcgcggcgACGGCGGuuCCAu -3'
miRNA:   3'- -CAGCUCuaGGUCC-------UGCUGCCugGGUu -5'
14636 3' -57 NC_003521.1 + 91856 0.69 0.819429
Target:  5'- ------cUCCAGGGCGGCGGACCa-- -3'
miRNA:   3'- cagcucuAGGUCCUGCUGCCUGGguu -5'
14636 3' -57 NC_003521.1 + 4262 0.69 0.811039
Target:  5'- -aCGAGA---AGGACGGCGGAgCCGAc -3'
miRNA:   3'- caGCUCUaggUCCUGCUGCCUgGGUU- -5'
14636 3' -57 NC_003521.1 + 147156 0.7 0.797302
Target:  5'- -cCGGGGUCCGGGACaGGggaauuuuggcaaccCGGACCCc- -3'
miRNA:   3'- caGCUCUAGGUCCUG-CU---------------GCCUGGGuu -5'
14636 3' -57 NC_003521.1 + 102303 0.7 0.776037
Target:  5'- aGUCGAGGUgCGccGGACccaGCGGGCCCGu -3'
miRNA:   3'- -CAGCUCUAgGU--CCUGc--UGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 31946 0.7 0.757783
Target:  5'- cUCGGGGUCCAGGAacaGGCacauGGugCCGu -3'
miRNA:   3'- cAGCUCUAGGUCCUg--CUG----CCugGGUu -5'
14636 3' -57 NC_003521.1 + 122725 0.71 0.729644
Target:  5'- gGUCGuGGUCguGGGCGACGGcGCCg-- -3'
miRNA:   3'- -CAGCuCUAGguCCUGCUGCC-UGGguu -5'
14636 3' -57 NC_003521.1 + 15251 0.71 0.729644
Target:  5'- -cCGAGcgCCAGGACGAcaCGGGuCCCc- -3'
miRNA:   3'- caGCUCuaGGUCCUGCU--GCCU-GGGuu -5'
14636 3' -57 NC_003521.1 + 194640 0.71 0.716256
Target:  5'- uUUGAGcuguccuuccgcuUCCAGGACGACGaGCCCGAg -3'
miRNA:   3'- cAGCUCu------------AGGUCCUGCUGCcUGGGUU- -5'
14636 3' -57 NC_003521.1 + 196967 0.71 0.710476
Target:  5'- -cCGGGAgccggCCGGGGCgccuguGACGGGCCCGc -3'
miRNA:   3'- caGCUCUa----GGUCCUG------CUGCCUGGGUu -5'
14636 3' -57 NC_003521.1 + 5913 0.71 0.710476
Target:  5'- --gGAGGUCCGcGuGACcuGACGGACCCGAg -3'
miRNA:   3'- cagCUCUAGGU-C-CUG--CUGCCUGGGUU- -5'
14636 3' -57 NC_003521.1 + 113343 0.71 0.700795
Target:  5'- -cCGGGGggcuUCCAGGGgGACGGGCCgGGg -3'
miRNA:   3'- caGCUCU----AGGUCCUgCUGCCUGGgUU- -5'
14636 3' -57 NC_003521.1 + 87091 0.72 0.671461
Target:  5'- gGUUGAGGUCCAGGuugaaggccuGCGugGcGCCCAc -3'
miRNA:   3'- -CAGCUCUAGGUCC----------UGCugCcUGGGUu -5'
14636 3' -57 NC_003521.1 + 59866 0.73 0.592464
Target:  5'- gGUgGAGAUCCAGGACcccGCGGACUa-- -3'
miRNA:   3'- -CAgCUCUAGGUCCUGc--UGCCUGGguu -5'
14636 3' -57 NC_003521.1 + 70030 0.74 0.543738
Target:  5'- uUgGGGAUCCaacGGGACGugGGGCgCCAAg -3'
miRNA:   3'- cAgCUCUAGG---UCCUGCugCCUG-GGUU- -5'
14636 3' -57 NC_003521.1 + 91912 0.74 0.531269
Target:  5'- -cCG-GAUCCAGGACGGCGGcggcgaugcgguggACCCGg -3'
miRNA:   3'- caGCuCUAGGUCCUGCUGCC--------------UGGGUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.