miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 3' -54.6 NC_003521.1 + 47198 0.66 0.980985
Target:  5'- -gUGGUCaggUUUCaGCGCGGGCAacacACCg -3'
miRNA:   3'- cuGCCAGa--AGAG-CGCGCCUGUga--UGG- -5'
14637 3' -54.6 NC_003521.1 + 102799 0.66 0.984736
Target:  5'- cGGCGGcCgccagCUCGgGCGGcagcaaguagcgGCGCUGCg -3'
miRNA:   3'- -CUGCCaGaa---GAGCgCGCC------------UGUGAUGg -5'
14637 3' -54.6 NC_003521.1 + 235006 0.66 0.982938
Target:  5'- aGCGGUCccccuggcCUC-CGCGGACGCggguuuacggACCg -3'
miRNA:   3'- cUGCCAGaa------GAGcGCGCCUGUGa---------UGG- -5'
14637 3' -54.6 NC_003521.1 + 187875 0.66 0.984736
Target:  5'- uGGCGGUCaccacCUCGgGCGG-CACggGCg -3'
miRNA:   3'- -CUGCCAGaa---GAGCgCGCCuGUGa-UGg -5'
14637 3' -54.6 NC_003521.1 + 45108 0.66 0.98275
Target:  5'- aGACGGUggaggcgUUUUacgacaCGCuGCGGGCGCUGCUa -3'
miRNA:   3'- -CUGCCA-------GAAGa-----GCG-CGCCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 117729 0.66 0.984736
Target:  5'- gGACGGUCUggaggUGCGCGuGCcCUACg -3'
miRNA:   3'- -CUGCCAGAaga--GCGCGCcUGuGAUGg -5'
14637 3' -54.6 NC_003521.1 + 231912 0.66 0.986386
Target:  5'- aGCGGcUCUUCUCcCGCGccguagccaGCUACCa -3'
miRNA:   3'- cUGCC-AGAAGAGcGCGCcug------UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 139449 0.66 0.986386
Target:  5'- aGCGGcgCgacggCUCGCGCacccgGGACuuucGCUGCCu -3'
miRNA:   3'- cUGCCa-Gaa---GAGCGCG-----CCUG----UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 98661 0.66 0.986386
Target:  5'- cGACGG-CgagCUUGCGCGGAg---ACCu -3'
miRNA:   3'- -CUGCCaGaa-GAGCGCGCCUgugaUGG- -5'
14637 3' -54.6 NC_003521.1 + 37382 0.66 0.982938
Target:  5'- uGCGGUgUUCgaggCgGCGgGGGCGCccggGCCu -3'
miRNA:   3'- cUGCCAgAAGa---G-CGCgCCUGUGa---UGG- -5'
14637 3' -54.6 NC_003521.1 + 110304 0.66 0.984736
Target:  5'- cACGGUCUgCUCGgGCaGcCGCaggGCCa -3'
miRNA:   3'- cUGCCAGAaGAGCgCGcCuGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 8896 0.66 0.984736
Target:  5'- cAUGGUCUgguagcuggCUacgGCGCGGGagaagagcCGCUGCCg -3'
miRNA:   3'- cUGCCAGAa--------GAg--CGCGCCU--------GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 217101 0.66 0.984563
Target:  5'- -uCGGuguacUCUUUUagcaucuggaagcCGCGCGGACAC-ACCa -3'
miRNA:   3'- cuGCC-----AGAAGA-------------GCGCGCCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 210013 0.66 0.978868
Target:  5'- cGCGGg--UUUCGCcgGCGGGCccucggugcGCUACCg -3'
miRNA:   3'- cUGCCagaAGAGCG--CGCCUG---------UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 6103 0.67 0.974121
Target:  5'- aACGGUCgug-CGaguCGCGGACACgcaguUGCCa -3'
miRNA:   3'- cUGCCAGaagaGC---GCGCCUGUG-----AUGG- -5'
14637 3' -54.6 NC_003521.1 + 172128 0.67 0.971476
Target:  5'- cACGGUCaugagUUCGuCGCGGcACAUgGCCg -3'
miRNA:   3'- cUGCCAGaa---GAGC-GCGCC-UGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 102318 0.67 0.974121
Target:  5'- cGCGGcaUCgucgUCgugCGCGUGGGCGCcgacGCCg -3'
miRNA:   3'- cUGCC--AGa---AGa--GCGCGCCUGUGa---UGG- -5'
14637 3' -54.6 NC_003521.1 + 153241 0.67 0.968642
Target:  5'- uGAUGGaCUUCUUG-GCGu-CGCUACCg -3'
miRNA:   3'- -CUGCCaGAAGAGCgCGCcuGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 121209 0.67 0.971476
Target:  5'- cACGGUC---UCGCGCaGGGCGCgcagcuCCa -3'
miRNA:   3'- cUGCCAGaagAGCGCG-CCUGUGau----GG- -5'
14637 3' -54.6 NC_003521.1 + 11492 0.67 0.965614
Target:  5'- -uCGG-CUUCgcucuaugUCGCGCacccGGGCAUUACCa -3'
miRNA:   3'- cuGCCaGAAG--------AGCGCG----CCUGUGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.