miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 3' -54.6 NC_003521.1 + 983 0.71 0.844503
Target:  5'- cGGCGGUCUgCUCcCGUGGGC-CgGCCg -3'
miRNA:   3'- -CUGCCAGAaGAGcGCGCCUGuGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 6103 0.67 0.974121
Target:  5'- aACGGUCgug-CGaguCGCGGACACgcaguUGCCa -3'
miRNA:   3'- cUGCCAGaagaGC---GCGCCUGUG-----AUGG- -5'
14637 3' -54.6 NC_003521.1 + 8896 0.66 0.984736
Target:  5'- cAUGGUCUgguagcuggCUacgGCGCGGGagaagagcCGCUGCCg -3'
miRNA:   3'- cUGCCAGAa--------GAg--CGCGCCU--------GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 11492 0.67 0.965614
Target:  5'- -uCGG-CUUCgcucuaugUCGCGCacccGGGCAUUACCa -3'
miRNA:   3'- cuGCCaGAAG--------AGCGCG----CCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 18429 0.68 0.955309
Target:  5'- uGCGGcCUgCUcaagaCGCGCGGcCugUGCCg -3'
miRNA:   3'- cUGCCaGAaGA-----GCGCGCCuGugAUGG- -5'
14637 3' -54.6 NC_003521.1 + 24444 0.67 0.965614
Target:  5'- cGGCGGgCUcggaacaggUC-CGCGCGGAcCACggGCCu -3'
miRNA:   3'- -CUGCCaGA---------AGaGCGCGCCU-GUGa-UGG- -5'
14637 3' -54.6 NC_003521.1 + 26147 0.7 0.894405
Target:  5'- -gUGGUCUUC-CGCGUcuacGGACuGCUGCUg -3'
miRNA:   3'- cuGCCAGAAGaGCGCG----CCUG-UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 37382 0.66 0.982938
Target:  5'- uGCGGUgUUCgaggCgGCGgGGGCGCccggGCCu -3'
miRNA:   3'- cUGCCAgAAGa---G-CGCgCCUGUGa---UGG- -5'
14637 3' -54.6 NC_003521.1 + 41855 0.7 0.894405
Target:  5'- uGACGGUCagcacgcUCUCGCGCcuGGugcccaaccucCACUGCCu -3'
miRNA:   3'- -CUGCCAGa------AGAGCGCG--CCu----------GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 45108 0.66 0.98275
Target:  5'- aGACGGUggaggcgUUUUacgacaCGCuGCGGGCGCUGCUa -3'
miRNA:   3'- -CUGCCA-------GAAGa-----GCG-CGCCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 47198 0.66 0.980985
Target:  5'- -gUGGUCaggUUUCaGCGCGGGCAacacACCg -3'
miRNA:   3'- cuGCCAGa--AGAG-CGCGCCUGUga--UGG- -5'
14637 3' -54.6 NC_003521.1 + 47976 0.69 0.918278
Target:  5'- cGCGGcgucgCUUCUCGUccaCGGACGCgccGCCg -3'
miRNA:   3'- cUGCCa----GAAGAGCGc--GCCUGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 50434 0.73 0.785777
Target:  5'- cGCGGU--UCUCGuCGUGGGCugUAUCg -3'
miRNA:   3'- cUGCCAgaAGAGC-GCGCCUGugAUGG- -5'
14637 3' -54.6 NC_003521.1 + 55851 0.68 0.955309
Target:  5'- cACGGUg-UCcgaauugcaaaUCGCGCccaagaugGGACGCUACCa -3'
miRNA:   3'- cUGCCAgaAG-----------AGCGCG--------CCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 57241 0.68 0.951453
Target:  5'- aGCGG-CU-CUCGCGCGGcCAgUugGCCu -3'
miRNA:   3'- cUGCCaGAaGAGCGCGCCuGUgA--UGG- -5'
14637 3' -54.6 NC_003521.1 + 57415 0.69 0.918278
Target:  5'- uGCGGUCgcccaccgUCUCGCGgaCGGGCucCUGCa -3'
miRNA:   3'- cUGCCAGa-------AGAGCGC--GCCUGu-GAUGg -5'
14637 3' -54.6 NC_003521.1 + 59080 0.67 0.974121
Target:  5'- -uCGGcCggaUCGCGCGGcCGCUugGCCa -3'
miRNA:   3'- cuGCCaGaagAGCGCGCCuGUGA--UGG- -5'
14637 3' -54.6 NC_003521.1 + 72189 0.8 0.382913
Target:  5'- --gGGUCUUCUCGCGCaGGAU-CUGCCc -3'
miRNA:   3'- cugCCAGAAGAGCGCG-CCUGuGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 79344 0.7 0.906784
Target:  5'- --aGGg--UCUCGCGCaaaGGACACgGCCa -3'
miRNA:   3'- cugCCagaAGAGCGCG---CCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 81634 0.67 0.965614
Target:  5'- cGugGGUC-UCg-GCGCGGAUGgUGCg -3'
miRNA:   3'- -CugCCAGaAGagCGCGCCUGUgAUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.