miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 3' -54.6 NC_003521.1 + 138587 0.68 0.958597
Target:  5'- cGCGG-CaUCUCGC-CGGACACcauguacgaggugUGCCa -3'
miRNA:   3'- cUGCCaGaAGAGCGcGCCUGUG-------------AUGG- -5'
14637 3' -54.6 NC_003521.1 + 135374 0.68 0.947381
Target:  5'- cGGCGGUUa--UCGCccGCGGGCGCcaaACCg -3'
miRNA:   3'- -CUGCCAGaagAGCG--CGCCUGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 165873 0.68 0.949036
Target:  5'- aGCGGUgcaCgugCUCGgGCGGcggguacaccaccccGCGCUGCCg -3'
miRNA:   3'- cUGCCA---Gaa-GAGCgCGCC---------------UGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 182159 0.68 0.951453
Target:  5'- aGGCGGUUaaaCUCGUGaCGGACG--GCCg -3'
miRNA:   3'- -CUGCCAGaa-GAGCGC-GCCUGUgaUGG- -5'
14637 3' -54.6 NC_003521.1 + 57241 0.68 0.951453
Target:  5'- aGCGG-CU-CUCGCGCGGcCAgUugGCCu -3'
miRNA:   3'- cUGCCaGAaGAGCGCGCCuGUgA--UGG- -5'
14637 3' -54.6 NC_003521.1 + 103254 0.68 0.951453
Target:  5'- aACGGU----UCGCGCGuGCACUGCUg -3'
miRNA:   3'- cUGCCAgaagAGCGCGCcUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 105928 0.68 0.955309
Target:  5'- aGACGGUCUg--CGUGUGGccgGCGCggaugaugACCg -3'
miRNA:   3'- -CUGCCAGAagaGCGCGCC---UGUGa-------UGG- -5'
14637 3' -54.6 NC_003521.1 + 131076 0.68 0.955309
Target:  5'- uGGCGGcgaccgCggCUCGCGCGGGCu---CCg -3'
miRNA:   3'- -CUGCCa-----GaaGAGCGCGCCUGugauGG- -5'
14637 3' -54.6 NC_003521.1 + 201210 0.68 0.955309
Target:  5'- cGGCGGUCUgCUCcCGCuGGGC-CgGCCg -3'
miRNA:   3'- -CUGCCAGAaGAGcGCG-CCUGuGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 187599 0.69 0.933838
Target:  5'- cGGCGGUCgcUUCGCccGCGGACucccggcgaGCUcACCg -3'
miRNA:   3'- -CUGCCAGaaGAGCG--CGCCUG---------UGA-UGG- -5'
14637 3' -54.6 NC_003521.1 + 149746 0.69 0.932373
Target:  5'- uGGCaGGUCUUCUgcggcgagggcggcCGCGCGGuACGCcucaacGCCa -3'
miRNA:   3'- -CUG-CCAGAAGA--------------GCGCGCC-UGUGa-----UGG- -5'
14637 3' -54.6 NC_003521.1 + 57415 0.69 0.918278
Target:  5'- uGCGGUCgcccaccgUCUCGCGgaCGGGCucCUGCa -3'
miRNA:   3'- cUGCCAGa-------AGAGCGC--GCCUGu-GAUGg -5'
14637 3' -54.6 NC_003521.1 + 72189 0.8 0.382913
Target:  5'- --gGGUCUUCUCGCGCaGGAU-CUGCCc -3'
miRNA:   3'- cugCCAGAAGAGCGCG-CCUGuGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 81760 0.77 0.534106
Target:  5'- uGugGGUCUUCUUGUG-GGAauucCACUGCCc -3'
miRNA:   3'- -CugCCAGAAGAGCGCgCCU----GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 232905 0.74 0.71106
Target:  5'- cGCGGUCUg--UGCGUGGAC-CUGCUg -3'
miRNA:   3'- cUGCCAGAagaGCGCGCCUGuGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 180066 0.71 0.852222
Target:  5'- cGGCGGggaUUCUCcCGCGGcgACUGCCg -3'
miRNA:   3'- -CUGCCag-AAGAGcGCGCCugUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 133968 0.7 0.881165
Target:  5'- uACGGgcgUCcaUGCGCGGACGCUgGCCg -3'
miRNA:   3'- cUGCCagaAGa-GCGCGCCUGUGA-UGG- -5'
14637 3' -54.6 NC_003521.1 + 41855 0.7 0.894405
Target:  5'- uGACGGUCagcacgcUCUCGCGCcuGGugcccaaccucCACUGCCu -3'
miRNA:   3'- -CUGCCAGa------AGAGCGCG--CCu----------GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 79344 0.7 0.906784
Target:  5'- --aGGg--UCUCGCGCaaaGGACACgGCCa -3'
miRNA:   3'- cugCCagaAGAGCGCG---CCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 154210 0.69 0.912642
Target:  5'- cGACaaGGUCaagucccUCUCGCGCGaGCGCUucGCCg -3'
miRNA:   3'- -CUG--CCAGa------AGAGCGCGCcUGUGA--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.