miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 5' -58.4 NC_003521.1 + 235125 1.09 0.002851
Target:  5'- aUAGACAGCCCCCGGGAUGGUGAUCGCc -3'
miRNA:   3'- -AUCUGUCGGGGGCCCUACCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 232206 0.78 0.274064
Target:  5'- ----gGGCCCCCGcGGGUGGUGGUgGCu -3'
miRNA:   3'- aucugUCGGGGGC-CCUACCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 69045 0.73 0.500471
Target:  5'- gAGcAUGGCCCCCaccaccGGAUGGUGAUUGUu -3'
miRNA:   3'- aUC-UGUCGGGGGc-----CCUACCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 56806 0.72 0.566793
Target:  5'- -cGACGGCaCCUCGGGGUGG-GAaCGUc -3'
miRNA:   3'- auCUGUCG-GGGGCCCUACCaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 37220 0.72 0.576478
Target:  5'- uUAGGCGGCCUCgGGGGUGGaGAcCGg -3'
miRNA:   3'- -AUCUGUCGGGGgCCCUACCaCUaGCg -5'
14637 5' -58.4 NC_003521.1 + 178798 0.72 0.605725
Target:  5'- aGGACgGGCCCCCGGGcaccucGUGGUaucUCGUg -3'
miRNA:   3'- aUCUG-UCGGGGGCCC------UACCAcu-AGCG- -5'
14637 5' -58.4 NC_003521.1 + 120885 0.7 0.674281
Target:  5'- cGGACuGCCCCUGGaGcgGGUGcccGUCaGCg -3'
miRNA:   3'- aUCUGuCGGGGGCC-CuaCCAC---UAG-CG- -5'
14637 5' -58.4 NC_003521.1 + 105134 0.7 0.690793
Target:  5'- gAGGCAGaCCCCCGaGGucccccaggacgagGUGGUGAcgaCGCc -3'
miRNA:   3'- aUCUGUC-GGGGGC-CC--------------UACCACUa--GCG- -5'
14637 5' -58.4 NC_003521.1 + 112443 0.7 0.703334
Target:  5'- cAGGCGGCCCaggCGGcccUGGUGggCGCg -3'
miRNA:   3'- aUCUGUCGGGg--GCCcu-ACCACuaGCG- -5'
14637 5' -58.4 NC_003521.1 + 77698 0.7 0.712919
Target:  5'- cAGACAGaUgCCCGaGGAggcggcGGUGGUCGUg -3'
miRNA:   3'- aUCUGUC-GgGGGC-CCUa-----CCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 37518 0.7 0.72244
Target:  5'- cGGACAucagcgacGUCCUgGGGGUGGgcagcgggGGUCGCg -3'
miRNA:   3'- aUCUGU--------CGGGGgCCCUACCa-------CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 129143 0.69 0.731891
Target:  5'- cAGGCGGCgCUCagcucgaagGGGAUGGUGAugggcgacuucUCGCu -3'
miRNA:   3'- aUCUGUCGgGGG---------CCCUACCACU-----------AGCG- -5'
14637 5' -58.4 NC_003521.1 + 224317 0.69 0.731891
Target:  5'- cAGAC-GCCCCCGucAcGGUGAcUCGCg -3'
miRNA:   3'- aUCUGuCGGGGGCccUaCCACU-AGCG- -5'
14637 5' -58.4 NC_003521.1 + 226293 0.69 0.759732
Target:  5'- -uGGCguacgAGCCCUCGGGcGUGGUG-UCGUu -3'
miRNA:   3'- auCUG-----UCGGGGGCCC-UACCACuAGCG- -5'
14637 5' -58.4 NC_003521.1 + 40970 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 188740 0.69 0.768816
Target:  5'- gAGcGCGGCCCUC---AUGGUGGUCGCu -3'
miRNA:   3'- aUC-UGUCGGGGGcccUACCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 44285 0.69 0.768816
Target:  5'- -cGGCuuucuCCCCCGGGAgcUGGgcgGGUUGCu -3'
miRNA:   3'- auCUGuc---GGGGGCCCU--ACCa--CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 649 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 71417 0.69 0.781343
Target:  5'- -cGGCGGCCCCgaaccugacagaggaCGaGGcgGG-GAUCGCg -3'
miRNA:   3'- auCUGUCGGGG---------------GC-CCuaCCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 152505 0.68 0.803953
Target:  5'- cAGAUAgGCCUCgGGGAUGG-GGUCcaggGCg -3'
miRNA:   3'- aUCUGU-CGGGGgCCCUACCaCUAG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.