miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 5' -58.4 NC_003521.1 + 649 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 18909 0.66 0.906224
Target:  5'- -cGGCAGCCCCgaaGGGUGGcGccgCGCg -3'
miRNA:   3'- auCUGUCGGGGgc-CCUACCaCua-GCG- -5'
14637 5' -58.4 NC_003521.1 + 20908 0.66 0.893958
Target:  5'- aGGAgcaGGUCCCCGGGGaccGGUcucaAUCGCa -3'
miRNA:   3'- aUCUg--UCGGGGGCCCUa--CCAc---UAGCG- -5'
14637 5' -58.4 NC_003521.1 + 25569 0.66 0.908575
Target:  5'- cAGGCGGCCgCgGGGAcaGGUGGgcuuguucauccugCGCa -3'
miRNA:   3'- aUCUGUCGGgGgCCCUa-CCACUa-------------GCG- -5'
14637 5' -58.4 NC_003521.1 + 37220 0.72 0.576478
Target:  5'- uUAGGCGGCCUCgGGGGUGGaGAcCGg -3'
miRNA:   3'- -AUCUGUCGGGGgCCCUACCaCUaGCg -5'
14637 5' -58.4 NC_003521.1 + 37518 0.7 0.72244
Target:  5'- cGGACAucagcgacGUCCUgGGGGUGGgcagcgggGGUCGCg -3'
miRNA:   3'- aUCUGU--------CGGGGgCCCUACCa-------CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 37619 0.66 0.900198
Target:  5'- gGGAUuaccugguGGCCUCCGGcGGugaacaucUGGUGGUgGCa -3'
miRNA:   3'- aUCUG--------UCGGGGGCC-CU--------ACCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 38230 0.67 0.828833
Target:  5'- aGGGCGGCCUCggCGGGcgGGgcgGAgaCGCg -3'
miRNA:   3'- aUCUGUCGGGG--GCCCuaCCa--CUa-GCG- -5'
14637 5' -58.4 NC_003521.1 + 40970 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 44285 0.69 0.768816
Target:  5'- -cGGCuuucuCCCCCGGGAgcUGGgcgGGUUGCu -3'
miRNA:   3'- auCUGuc---GGGGGCCCU--ACCa--CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 44836 0.67 0.86693
Target:  5'- --cACAGCUCCUGGGGcUGGUGAc--- -3'
miRNA:   3'- aucUGUCGGGGGCCCU-ACCACUagcg -5'
14637 5' -58.4 NC_003521.1 + 56806 0.72 0.566793
Target:  5'- -cGACGGCaCCUCGGGGUGG-GAaCGUc -3'
miRNA:   3'- auCUGUCG-GGGGCCCUACCaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 60097 0.67 0.844609
Target:  5'- --aACGGCUcuucuuccaCCCGGGGcUGGUGA-CGCg -3'
miRNA:   3'- aucUGUCGG---------GGGCCCU-ACCACUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 61611 0.67 0.844609
Target:  5'- gGGcGCAGCgCUCCaacGGAcgGGUGAUCGCc -3'
miRNA:   3'- aUC-UGUCG-GGGGc--CCUa-CCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 67415 0.66 0.893958
Target:  5'- --aGCAGCgCCCCcuccacGGGUGGUGuUUGCg -3'
miRNA:   3'- aucUGUCG-GGGGc-----CCUACCACuAGCG- -5'
14637 5' -58.4 NC_003521.1 + 69045 0.73 0.500471
Target:  5'- gAGcAUGGCCCCCaccaccGGAUGGUGAUUGUu -3'
miRNA:   3'- aUC-UGUCGGGGGc-----CCUACCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 71417 0.69 0.781343
Target:  5'- -cGGCGGCCCCgaaccugacagaggaCGaGGcgGG-GAUCGCg -3'
miRNA:   3'- auCUGUCGGGG---------------GC-CCuaCCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 74920 0.67 0.86693
Target:  5'- gAGuCGGCCCggcagcgCGGGGUGGUGuaccCGCc -3'
miRNA:   3'- aUCuGUCGGGg------GCCCUACCACua--GCG- -5'
14637 5' -58.4 NC_003521.1 + 77698 0.7 0.712919
Target:  5'- cAGACAGaUgCCCGaGGAggcggcGGUGGUCGUg -3'
miRNA:   3'- aUCUGUC-GgGGGC-CCUa-----CCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 84569 0.66 0.88085
Target:  5'- --aGCGGCCCUgguuCGGGAUGaUGGUCaGCu -3'
miRNA:   3'- aucUGUCGGGG----GCCCUACcACUAG-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.