Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 193316 | 0.66 | 0.893958 |
Target: 5'- gUGGugGGCa--CGGuGggGGUGGUCGCc -3' miRNA: 3'- -AUCugUCGgggGCC-CuaCCACUAGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 238458 | 0.67 | 0.828833 |
Target: 5'- aGGGCGGCCUCggCGGGcgGGgcgGAgaCGCg -3' miRNA: 3'- aUCUGUCGGGG--GCCCuaCCa--CUa-GCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 61611 | 0.67 | 0.844609 |
Target: 5'- gGGcGCAGCgCUCCaacGGAcgGGUGAUCGCc -3' miRNA: 3'- aUC-UGUCG-GGGGc--CCUa-CCACUAGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 60097 | 0.67 | 0.844609 |
Target: 5'- --aACGGCUcuucuuccaCCCGGGGcUGGUGA-CGCg -3' miRNA: 3'- aucUGUCGG---------GGGCCCU-ACCACUaGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 213605 | 0.67 | 0.859677 |
Target: 5'- -uGACcaGGCUgUUGGGGUGGcGGUCGCc -3' miRNA: 3'- auCUG--UCGGgGGCCCUACCaCUAGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 148441 | 0.67 | 0.859677 |
Target: 5'- -cGGCGGCUCCaGGGGUggccGGUGcgUGCu -3' miRNA: 3'- auCUGUCGGGGgCCCUA----CCACuaGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 119105 | 0.67 | 0.86693 |
Target: 5'- -cGGCAGCUCgCCGGGcgacUGG-GGUCGg -3' miRNA: 3'- auCUGUCGGG-GGCCCu---ACCaCUAGCg -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 84569 | 0.66 | 0.88085 |
Target: 5'- --aGCGGCCCUgguuCGGGAUGaUGGUCaGCu -3' miRNA: 3'- aucUGUCGGGG----GCCCUACcACUAG-CG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 20908 | 0.66 | 0.893958 |
Target: 5'- aGGAgcaGGUCCCCGGGGaccGGUcucaAUCGCa -3' miRNA: 3'- aUCUg--UCGGGGGCCCUa--CCAc---UAGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 186501 | 0.68 | 0.819872 |
Target: 5'- -cGAgAGCCCCguCGGGAUcucgggcGGUG-UCGCc -3' miRNA: 3'- auCUgUCGGGG--GCCCUA-------CCACuAGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 152505 | 0.68 | 0.803953 |
Target: 5'- cAGAUAgGCCUCgGGGAUGG-GGUCcaggGCg -3' miRNA: 3'- aUCUGU-CGGGGgCCCUACCaCUAG----CG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 71417 | 0.69 | 0.781343 |
Target: 5'- -cGGCGGCCCCgaaccugacagaggaCGaGGcgGG-GAUCGCg -3' miRNA: 3'- auCUGUCGGGG---------------GC-CCuaCCaCUAGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 232206 | 0.78 | 0.274064 |
Target: 5'- ----gGGCCCCCGcGGGUGGUGGUgGCu -3' miRNA: 3'- aucugUCGGGGGC-CCUACCACUAgCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 69045 | 0.73 | 0.500471 |
Target: 5'- gAGcAUGGCCCCCaccaccGGAUGGUGAUUGUu -3' miRNA: 3'- aUC-UGUCGGGGGc-----CCUACCACUAGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 178798 | 0.72 | 0.605725 |
Target: 5'- aGGACgGGCCCCCGGGcaccucGUGGUaucUCGUg -3' miRNA: 3'- aUCUG-UCGGGGGCCC------UACCAcu-AGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 105134 | 0.7 | 0.690793 |
Target: 5'- gAGGCAGaCCCCCGaGGucccccaggacgagGUGGUGAcgaCGCc -3' miRNA: 3'- aUCUGUC-GGGGGC-CC--------------UACCACUa--GCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 112443 | 0.7 | 0.703334 |
Target: 5'- cAGGCGGCCCaggCGGcccUGGUGggCGCg -3' miRNA: 3'- aUCUGUCGGGg--GCCcu-ACCACuaGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 129143 | 0.69 | 0.731891 |
Target: 5'- cAGGCGGCgCUCagcucgaagGGGAUGGUGAugggcgacuucUCGCu -3' miRNA: 3'- aUCUGUCGgGGG---------CCCUACCACU-----------AGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 226293 | 0.69 | 0.759732 |
Target: 5'- -uGGCguacgAGCCCUCGGGcGUGGUG-UCGUu -3' miRNA: 3'- auCUG-----UCGGGGGCCC-UACCACuAGCG- -5' |
|||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 649 | 0.69 | 0.768816 |
Target: 5'- aGGACGGgCCCCGGGGg---GA-CGCg -3' miRNA: 3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home