miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 5' -58.4 NC_003521.1 + 207218 0.67 0.859677
Target:  5'- -cGACAGCaacuauUUCGGGGUGGUGcgCGa -3'
miRNA:   3'- auCUGUCGg-----GGGCCCUACCACuaGCg -5'
14637 5' -58.4 NC_003521.1 + 213605 0.67 0.859677
Target:  5'- -uGACcaGGCUgUUGGGGUGGcGGUCGCc -3'
miRNA:   3'- auCUG--UCGGgGGCCCUACCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 236279 0.67 0.852235
Target:  5'- gUAGugAcUCCCCGGGGacccUGcgcGUGAUCGCc -3'
miRNA:   3'- -AUCugUcGGGGGCCCU----AC---CACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 60097 0.67 0.844609
Target:  5'- --aACGGCUcuucuuccaCCCGGGGcUGGUGA-CGCg -3'
miRNA:   3'- aucUGUCGG---------GGGCCCU-ACCACUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 61611 0.67 0.844609
Target:  5'- gGGcGCAGCgCUCCaacGGAcgGGUGAUCGCc -3'
miRNA:   3'- aUC-UGUCG-GGGGc--CCUa-CCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 108913 0.67 0.828833
Target:  5'- -cGACAGCUCCUucagcaGGAUGGccuccaGAUCGCu -3'
miRNA:   3'- auCUGUCGGGGGc-----CCUACCa-----CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 38230 0.67 0.828833
Target:  5'- aGGGCGGCCUCggCGGGcgGGgcgGAgaCGCg -3'
miRNA:   3'- aUCUGUCGGGG--GCCCuaCCa--CUa-GCG- -5'
14637 5' -58.4 NC_003521.1 + 238458 0.67 0.828833
Target:  5'- aGGGCGGCCUCggCGGGcgGGgcgGAgaCGCg -3'
miRNA:   3'- aUCUGUCGGGG--GCCCuaCCa--CUa-GCG- -5'
14637 5' -58.4 NC_003521.1 + 178805 0.67 0.828833
Target:  5'- gAGGCAuGCCCggCGGGcgGGUcGAUCGa -3'
miRNA:   3'- aUCUGU-CGGGg-GCCCuaCCA-CUAGCg -5'
14637 5' -58.4 NC_003521.1 + 217364 0.68 0.820694
Target:  5'- gUAG-UAGUCCCCGuaccaGAUGGcGGUCGCg -3'
miRNA:   3'- -AUCuGUCGGGGGCc----CUACCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 103971 0.68 0.820694
Target:  5'- gGGACAGCgcaggCCCaGGGUGGUGAagacggCGUa -3'
miRNA:   3'- aUCUGUCGg----GGGcCCUACCACUa-----GCG- -5'
14637 5' -58.4 NC_003521.1 + 186501 0.68 0.819872
Target:  5'- -cGAgAGCCCCguCGGGAUcucgggcGGUG-UCGCc -3'
miRNA:   3'- auCUgUCGGGG--GCCCUA-------CCACuAGCG- -5'
14637 5' -58.4 NC_003521.1 + 152505 0.68 0.803953
Target:  5'- cAGAUAgGCCUCgGGGAUGG-GGUCcaggGCg -3'
miRNA:   3'- aUCUGU-CGGGGgCCCUACCaCUAG----CG- -5'
14637 5' -58.4 NC_003521.1 + 71417 0.69 0.781343
Target:  5'- -cGGCGGCCCCgaaccugacagaggaCGaGGcgGG-GAUCGCg -3'
miRNA:   3'- auCUGUCGGGG---------------GC-CCuaCCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 44285 0.69 0.768816
Target:  5'- -cGGCuuucuCCCCCGGGAgcUGGgcgGGUUGCu -3'
miRNA:   3'- auCUGuc---GGGGGCCCU--ACCa--CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 188740 0.69 0.768816
Target:  5'- gAGcGCGGCCCUC---AUGGUGGUCGCu -3'
miRNA:   3'- aUC-UGUCGGGGGcccUACCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 649 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 40970 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 226293 0.69 0.759732
Target:  5'- -uGGCguacgAGCCCUCGGGcGUGGUG-UCGUu -3'
miRNA:   3'- auCUG-----UCGGGGGCCC-UACCACuAGCG- -5'
14637 5' -58.4 NC_003521.1 + 224317 0.69 0.731891
Target:  5'- cAGAC-GCCCCCGucAcGGUGAcUCGCg -3'
miRNA:   3'- aUCUGuCGGGGGCccUaCCACU-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.