miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 124447 0.66 0.994501
Target:  5'- cGUGguugggccgCGGCGGCacgcgUUCGCCGCCGc -3'
miRNA:   3'- -CACaa-------GCUGUCGcuaa-AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 126957 0.66 0.992736
Target:  5'- ----gUGACGGCGcuuacaCCACCGCCa -3'
miRNA:   3'- cacaaGCUGUCGCuaaa--GGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 36979 0.66 0.991698
Target:  5'- gGUGcUCGGCGGCGAcaUCCGCgacgagggCGUCGc -3'
miRNA:   3'- -CACaAGCUGUCGCUaaAGGUG--------GCGGC- -5'
14638 3' -52.8 NC_003521.1 + 100251 0.66 0.993667
Target:  5'- gGUGccCGACGaCGAgcugucgCCGCCGCCGc -3'
miRNA:   3'- -CACaaGCUGUcGCUaaa----GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 120572 0.66 0.995243
Target:  5'- gGUG-UCGA-GGCGAUgcacggcgCgGCCGCCGg -3'
miRNA:   3'- -CACaAGCUgUCGCUAaa------GgUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 52922 0.66 0.993667
Target:  5'- -cGUcaUCGACucGCGAUUgUCCACCcaGCUGa -3'
miRNA:   3'- caCA--AGCUGu-CGCUAA-AGGUGG--CGGC- -5'
14638 3' -52.8 NC_003521.1 + 150673 0.66 0.995243
Target:  5'- ----cCGGCGGCGGcg-CCGCUGCUGc -3'
miRNA:   3'- cacaaGCUGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 123485 0.66 0.995313
Target:  5'- cGUGUccgUCGcCGGCGGggugucgucgucgCCGCUGCCGc -3'
miRNA:   3'- -CACA---AGCuGUCGCUaaa----------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 121587 0.66 0.991698
Target:  5'- cGUGUUCucCAGCGAgca-CACCaGCUGg -3'
miRNA:   3'- -CACAAGcuGUCGCUaaagGUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 182973 0.66 0.995243
Target:  5'- cGUGUcuagcagCGACGGCGuucggcgUCACCgGCCGa -3'
miRNA:   3'- -CACAa------GCUGUCGCuaaa---GGUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 14455 0.66 0.991698
Target:  5'- ----gCGGCGGCGucagCCGCCGCUc -3'
miRNA:   3'- cacaaGCUGUCGCuaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 166216 0.66 0.992736
Target:  5'- uUGgcgCGGCGGCGAgg-CgCGCCgGCCGc -3'
miRNA:   3'- cACaa-GCUGUCGCUaaaG-GUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 56908 0.66 0.993667
Target:  5'- -cGUcgCGACAGCGccgcagCACCGCCu -3'
miRNA:   3'- caCAa-GCUGUCGCuaaag-GUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 74004 0.66 0.992736
Target:  5'- ----aCGACAaccugguacugcGCGAgcUCUACCGCCGc -3'
miRNA:   3'- cacaaGCUGU------------CGCUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 35473 0.66 0.992736
Target:  5'- ---gUCGugcACGGCGcagcugCCGCCGCCGa -3'
miRNA:   3'- cacaAGC---UGUCGCuaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 118932 0.66 0.992126
Target:  5'- cGUGggCGGCGGCGucccgucagggCCAgCGCCc -3'
miRNA:   3'- -CACaaGCUGUCGCuaaa-------GGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 184666 0.66 0.991698
Target:  5'- cGUGUUCGcgcGCAGCGAgcagCacgaGCCGCa- -3'
miRNA:   3'- -CACAAGC---UGUCGCUaaa-Gg---UGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 5535 0.66 0.994501
Target:  5'- gGUGa-CGGCAGcCGGcgcggCCGCCGCCa -3'
miRNA:   3'- -CACaaGCUGUC-GCUaaa--GGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 168698 0.66 0.992736
Target:  5'- -cGUccUCGGucaGGUGAaucUCCACCGCCGc -3'
miRNA:   3'- caCA--AGCUg--UCGCUaa-AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 155662 0.66 0.992736
Target:  5'- cUGggUGGCGGCGGaggUCUggacgauucaucGCCGCCGa -3'
miRNA:   3'- cACaaGCUGUCGCUaa-AGG------------UGGCGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.