Results 1 - 20 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 124447 | 0.66 | 0.994501 |
Target: 5'- cGUGguugggccgCGGCGGCacgcgUUCGCCGCCGc -3' miRNA: 3'- -CACaa-------GCUGUCGcuaa-AGGUGGCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 126957 | 0.66 | 0.992736 |
Target: 5'- ----gUGACGGCGcuuacaCCACCGCCa -3' miRNA: 3'- cacaaGCUGUCGCuaaa--GGUGGCGGc -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 36979 | 0.66 | 0.991698 |
Target: 5'- gGUGcUCGGCGGCGAcaUCCGCgacgagggCGUCGc -3' miRNA: 3'- -CACaAGCUGUCGCUaaAGGUG--------GCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 100251 | 0.66 | 0.993667 |
Target: 5'- gGUGccCGACGaCGAgcugucgCCGCCGCCGc -3' miRNA: 3'- -CACaaGCUGUcGCUaaa----GGUGGCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 120572 | 0.66 | 0.995243 |
Target: 5'- gGUG-UCGA-GGCGAUgcacggcgCgGCCGCCGg -3' miRNA: 3'- -CACaAGCUgUCGCUAaa------GgUGGCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 52922 | 0.66 | 0.993667 |
Target: 5'- -cGUcaUCGACucGCGAUUgUCCACCcaGCUGa -3' miRNA: 3'- caCA--AGCUGu-CGCUAA-AGGUGG--CGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 150673 | 0.66 | 0.995243 |
Target: 5'- ----cCGGCGGCGGcg-CCGCUGCUGc -3' miRNA: 3'- cacaaGCUGUCGCUaaaGGUGGCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 123485 | 0.66 | 0.995313 |
Target: 5'- cGUGUccgUCGcCGGCGGggugucgucgucgCCGCUGCCGc -3' miRNA: 3'- -CACA---AGCuGUCGCUaaa----------GGUGGCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 121587 | 0.66 | 0.991698 |
Target: 5'- cGUGUUCucCAGCGAgca-CACCaGCUGg -3' miRNA: 3'- -CACAAGcuGUCGCUaaagGUGG-CGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 182973 | 0.66 | 0.995243 |
Target: 5'- cGUGUcuagcagCGACGGCGuucggcgUCACCgGCCGa -3' miRNA: 3'- -CACAa------GCUGUCGCuaaa---GGUGG-CGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 14455 | 0.66 | 0.991698 |
Target: 5'- ----gCGGCGGCGucagCCGCCGCUc -3' miRNA: 3'- cacaaGCUGUCGCuaaaGGUGGCGGc -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 166216 | 0.66 | 0.992736 |
Target: 5'- uUGgcgCGGCGGCGAgg-CgCGCCgGCCGc -3' miRNA: 3'- cACaa-GCUGUCGCUaaaG-GUGG-CGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 56908 | 0.66 | 0.993667 |
Target: 5'- -cGUcgCGACAGCGccgcagCACCGCCu -3' miRNA: 3'- caCAa-GCUGUCGCuaaag-GUGGCGGc -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 74004 | 0.66 | 0.992736 |
Target: 5'- ----aCGACAaccugguacugcGCGAgcUCUACCGCCGc -3' miRNA: 3'- cacaaGCUGU------------CGCUaaAGGUGGCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 35473 | 0.66 | 0.992736 |
Target: 5'- ---gUCGugcACGGCGcagcugCCGCCGCCGa -3' miRNA: 3'- cacaAGC---UGUCGCuaaa--GGUGGCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 118932 | 0.66 | 0.992126 |
Target: 5'- cGUGggCGGCGGCGucccgucagggCCAgCGCCc -3' miRNA: 3'- -CACaaGCUGUCGCuaaa-------GGUgGCGGc -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 184666 | 0.66 | 0.991698 |
Target: 5'- cGUGUUCGcgcGCAGCGAgcagCacgaGCCGCa- -3' miRNA: 3'- -CACAAGC---UGUCGCUaaa-Gg---UGGCGgc -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 5535 | 0.66 | 0.994501 |
Target: 5'- gGUGa-CGGCAGcCGGcgcggCCGCCGCCa -3' miRNA: 3'- -CACaaGCUGUC-GCUaaa--GGUGGCGGc -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 168698 | 0.66 | 0.992736 |
Target: 5'- -cGUccUCGGucaGGUGAaucUCCACCGCCGc -3' miRNA: 3'- caCA--AGCUg--UCGCUaa-AGGUGGCGGC- -5' |
|||||||
14638 | 3' | -52.8 | NC_003521.1 | + | 155662 | 0.66 | 0.992736 |
Target: 5'- cUGggUGGCGGCGGaggUCUggacgauucaucGCCGCCGa -3' miRNA: 3'- cACaaGCUGUCGCUaa-AGG------------UGGCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home