miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 3634 0.69 0.968085
Target:  5'- uUGUUCucUAGCGugccacggCCGCCGCCGu -3'
miRNA:   3'- cACAAGcuGUCGCuaaa----GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 43638 0.7 0.950324
Target:  5'- -aGga-GGCGGCGg---CCGCCGCCGg -3'
miRNA:   3'- caCaagCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 116760 0.7 0.950324
Target:  5'- cGUGgcUUGuGCAGCGugggCCGCCGCCGc -3'
miRNA:   3'- -CACa-AGC-UGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 126571 0.7 0.950324
Target:  5'- -cGUg-GGCAGCGGgaagCCGCCGUCGu -3'
miRNA:   3'- caCAagCUGUCGCUaaa-GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 53883 0.69 0.954312
Target:  5'- cUGcUCGAguGCGuucgCCGCCGCCc -3'
miRNA:   3'- cACaAGCUguCGCuaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 107804 0.69 0.957712
Target:  5'- ----cCGACGGUGAUuagggugUUCCACCGCgGc -3'
miRNA:   3'- cacaaGCUGUCGCUA-------AAGGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 187989 0.69 0.958078
Target:  5'- -aGUcgUCGAUgcuGuCGAUcUCCACCGCCGu -3'
miRNA:   3'- caCA--AGCUGu--C-GCUAaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 156050 0.69 0.961626
Target:  5'- cUGcUUCGGCGGUGccaacaacGUcgCCGCCGCCGc -3'
miRNA:   3'- cAC-AAGCUGUCGC--------UAaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 12234 0.69 0.961626
Target:  5'- -gGUUCGACGGCaGAccucacUCuCGCUGCCGa -3'
miRNA:   3'- caCAAGCUGUCG-CUaa----AG-GUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 239687 0.7 0.94611
Target:  5'- -gGgaCGGCAGCGGUUcgugUCCcgucGCCGCCu -3'
miRNA:   3'- caCaaGCUGUCGCUAA----AGG----UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 227365 0.7 0.932088
Target:  5'- ---gUCGACGGCGcua-CCGCCGCUGc -3'
miRNA:   3'- cacaAGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 166442 0.71 0.92695
Target:  5'- cGUGUagaUCGAgGGCGAg--CCGUCGCCGc -3'
miRNA:   3'- -CACA---AGCUgUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 59421 0.82 0.370513
Target:  5'- cGUGgcacgCGACAGCGGcg-CCGCCGCCGg -3'
miRNA:   3'- -CACaa---GCUGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 116822 0.73 0.855385
Target:  5'- cUGggUGcuGCAGCGGUUUCCagaccugacgGCCGCCGa -3'
miRNA:   3'- cACaaGC--UGUCGCUAAAGG----------UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 129303 0.72 0.877537
Target:  5'- cGUGgaacUUGAUGGCGugcgCCGCCGCCGc -3'
miRNA:   3'- -CACa---AGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 130130 0.72 0.877537
Target:  5'- -cGUcgUCGGCGGCGccg-CCGCUGCCGc -3'
miRNA:   3'- caCA--AGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 122809 0.71 0.904065
Target:  5'- -aGUcccgCGGCAGCGAcacgCCGCCGCUa -3'
miRNA:   3'- caCAa---GCUGUCGCUaaa-GGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 89315 0.71 0.910134
Target:  5'- cUGgcCGACGGCGGUagUUCACCGuCCGc -3'
miRNA:   3'- cACaaGCUGUCGCUAa-AGGUGGC-GGC- -5'
14638 3' -52.8 NC_003521.1 + 105549 0.71 0.914244
Target:  5'- cGUGUccucguccuccucgUCGuCGGCG---UCCGCCGCCGu -3'
miRNA:   3'- -CACA--------------AGCuGUCGCuaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 132633 0.71 0.92695
Target:  5'- ---cUCGGCGGCGGcg-CCACCGgCGg -3'
miRNA:   3'- cacaAGCUGUCGCUaaaGGUGGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.