miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 166216 0.66 0.992736
Target:  5'- uUGgcgCGGCGGCGAgg-CgCGCCgGCCGc -3'
miRNA:   3'- cACaa-GCUGUCGCUaaaG-GUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 74004 0.66 0.992736
Target:  5'- ----aCGACAaccugguacugcGCGAgcUCUACCGCCGc -3'
miRNA:   3'- cacaaGCUGU------------CGCUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 155662 0.66 0.992736
Target:  5'- cUGggUGGCGGCGGaggUCUggacgauucaucGCCGCCGa -3'
miRNA:   3'- cACaaGCUGUCGCUaa-AGG------------UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 35473 0.66 0.992736
Target:  5'- ---gUCGugcACGGCGcagcugCCGCCGCCGa -3'
miRNA:   3'- cacaAGC---UGUCGCuaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 168698 0.66 0.992736
Target:  5'- -cGUccUCGGucaGGUGAaucUCCACCGCCGc -3'
miRNA:   3'- caCA--AGCUg--UCGCUaa-AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 118932 0.66 0.992126
Target:  5'- cGUGggCGGCGGCGucccgucagggCCAgCGCCc -3'
miRNA:   3'- -CACaaGCUGUCGCuaaa-------GGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 131195 0.66 0.991698
Target:  5'- aUGUUCGcccgcuACGGCGAgaggggCCGgCGCCa -3'
miRNA:   3'- cACAAGC------UGUCGCUaaa---GGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 184666 0.66 0.991698
Target:  5'- cGUGUUCGcgcGCAGCGAgcagCacgaGCCGCa- -3'
miRNA:   3'- -CACAAGC---UGUCGCUaaa-Gg---UGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 121587 0.66 0.991698
Target:  5'- cGUGUUCucCAGCGAgca-CACCaGCUGg -3'
miRNA:   3'- -CACAAGcuGUCGCUaaagGUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 36979 0.66 0.991698
Target:  5'- gGUGcUCGGCGGCGAcaUCCGCgacgagggCGUCGc -3'
miRNA:   3'- -CACaAGCUGUCGCUaaAGGUG--------GCGGC- -5'
14638 3' -52.8 NC_003521.1 + 14455 0.66 0.991698
Target:  5'- ----gCGGCGGCGucagCCGCCGCUc -3'
miRNA:   3'- cacaaGCUGUCGCuaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 43814 0.67 0.990546
Target:  5'- aUG-UCGcaGCAGcCGGgucagCCGCCGCCGg -3'
miRNA:   3'- cACaAGC--UGUC-GCUaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 55752 0.67 0.990546
Target:  5'- -cGggCGGCAGCGAcaggCGCgGCCGg -3'
miRNA:   3'- caCaaGCUGUCGCUaaagGUGgCGGC- -5'
14638 3' -52.8 NC_003521.1 + 82849 0.67 0.990546
Target:  5'- -cGggCGGCGGCGucgcuaCCAgCGCCGu -3'
miRNA:   3'- caCaaGCUGUCGCuaaa--GGUgGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 183221 0.67 0.990546
Target:  5'- -aGcgCGACGGCacgcugacucGGggUUCGCCGCCGg -3'
miRNA:   3'- caCaaGCUGUCG----------CUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 105446 0.67 0.990424
Target:  5'- -gGUUUGGCgcccgcgGGCGAUaaCCGCCGCgGa -3'
miRNA:   3'- caCAAGCUG-------UCGCUAaaGGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 160331 0.67 0.989271
Target:  5'- cGUGggCGGC-GCGGUggCCuCCGUCGu -3'
miRNA:   3'- -CACaaGCUGuCGCUAaaGGuGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 178359 0.67 0.989271
Target:  5'- ----aCGACGGCGGUUUCCAaaaauCC-CCGu -3'
miRNA:   3'- cacaaGCUGUCGCUAAAGGU-----GGcGGC- -5'
14638 3' -52.8 NC_003521.1 + 110034 0.67 0.989271
Target:  5'- cGUGggCGcGCuGCGGUgaCC-CCGCCGa -3'
miRNA:   3'- -CACaaGC-UGuCGCUAaaGGuGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 157961 0.67 0.989271
Target:  5'- cUGggCGACgacggcgcugguAGCGAcg-CCGCCGCCc -3'
miRNA:   3'- cACaaGCUG------------UCGCUaaaGGUGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.