miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 17028 0.66 0.812085
Target:  5'- -gCGGGAagaGGAGCGACGacaacggcagcaccaGCagCGCCGACg -3'
miRNA:   3'- ugGCCCU---CCUUGCUGCg--------------CG--GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 17748 0.66 0.827439
Target:  5'- gGCCGaGGccgGGGAACuGGcCGUaCCGCCGGCg -3'
miRNA:   3'- -UGGC-CC---UCCUUG-CU-GCGcGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 103879 0.66 0.811262
Target:  5'- cGCCGacaGGGGGAugGGCugccGCGCgGUCAGg -3'
miRNA:   3'- -UGGC---CCUCCUugCUG----CGCGgCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 69411 0.66 0.827439
Target:  5'- gACgCGGGAcGGuGACGGCGCGCa-CCAccACg -3'
miRNA:   3'- -UG-GCCCU-CC-UUGCUGCGCGgcGGU--UG- -5'
14638 5' -60.3 NC_003521.1 + 28715 0.66 0.811262
Target:  5'- gACCGuGcGccaGAugGugGCGCaCGCCGACa -3'
miRNA:   3'- -UGGC-C-Cuc-CUugCugCGCG-GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 87374 0.66 0.819426
Target:  5'- gGCCGaGGuGGAggACGAgGCGgcggaggugaCGCCGACg -3'
miRNA:   3'- -UGGC-CCuCCU--UGCUgCGCg---------GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 77634 0.66 0.811262
Target:  5'- cGCCGGccgaGAGGAuCGACGUguuggaacuGCCGUCGGg -3'
miRNA:   3'- -UGGCC----CUCCUuGCUGCG---------CGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 149301 0.66 0.811262
Target:  5'- uGCUGGaGcGcGACGACGCgGCCGCCGu- -3'
miRNA:   3'- -UGGCC-CuCcUUGCUGCG-CGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 66279 0.66 0.827439
Target:  5'- aGCaggaGGGAGGcgGACuGGCGgGCacaGCCGACc -3'
miRNA:   3'- -UGg---CCCUCC--UUG-CUGCgCGg--CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 144916 0.66 0.827439
Target:  5'- uGCCGGuggccGAGGAguucAUGucGCGCGUCGCCGc- -3'
miRNA:   3'- -UGGCC-----CUCCU----UGC--UGCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 32722 0.66 0.827439
Target:  5'- -gUGGGGGGu-UGGCGaCGCCaCCAGCg -3'
miRNA:   3'- ugGCCCUCCuuGCUGC-GCGGcGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 235642 0.66 0.827439
Target:  5'- aGuuGGGAGGggUGcACccuCGCCGCCc-- -3'
miRNA:   3'- -UggCCCUCCuuGC-UGc--GCGGCGGuug -5'
14638 5' -60.3 NC_003521.1 + 168351 0.66 0.811262
Target:  5'- uGCUGGcGAaGAGCGGCGCGUagcggcaGUCGGCg -3'
miRNA:   3'- -UGGCC-CUcCUUGCUGCGCGg------CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 128449 0.66 0.857857
Target:  5'- aGCCaGGuGGAcgagACGcCGCaGCCGCCGcguGCg -3'
miRNA:   3'- -UGGcCCuCCU----UGCuGCG-CGGCGGU---UG- -5'
14638 5' -60.3 NC_003521.1 + 201012 0.66 0.819426
Target:  5'- cAUCGgcGGAGGAccgccCGGCGCcCCGCCGAg -3'
miRNA:   3'- -UGGC--CCUCCUu----GCUGCGcGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 86202 0.66 0.827439
Target:  5'- cACgGuGGAGGcgaagGGCGGCG-GCaCGCCGGCg -3'
miRNA:   3'- -UGgC-CCUCC-----UUGCUGCgCG-GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 51119 0.66 0.808785
Target:  5'- aGCCGGGAGGGcugguugagacagcACGA-GCGCaGCgaCGACa -3'
miRNA:   3'- -UGGCCCUCCU--------------UGCUgCGCGgCG--GUUG- -5'
14638 5' -60.3 NC_003521.1 + 68535 0.66 0.811262
Target:  5'- cACCGGac--GGCGGCaGCgGCCGCCAACu -3'
miRNA:   3'- -UGGCCcuccUUGCUG-CG-CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 70094 0.66 0.827439
Target:  5'- uGCCgcaGGGcaccuGGc-CGGCGUGCCGCCGAa -3'
miRNA:   3'- -UGG---CCCu----CCuuGCUGCGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 92006 0.66 0.819426
Target:  5'- -gCGGGAGcGGCGAgGCGCgGCggCGGCg -3'
miRNA:   3'- ugGCCCUCcUUGCUgCGCGgCG--GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.