miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 39 0.68 0.712636
Target:  5'- gGCCGGGAucggugagucacGGAaccgguuuccgcgGCGGCGUGCgGCgGGCc -3'
miRNA:   3'- -UGGCCCU------------CCU-------------UGCUGCGCGgCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 456 0.7 0.598795
Target:  5'- aGCCGGuGAGGcAGCGuuGCGUCacaggcucuGCCAGCg -3'
miRNA:   3'- -UGGCC-CUCC-UUGCugCGCGG---------CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 785 0.66 0.819426
Target:  5'- cAUCGgcGGAGGAccgccCGGCGCcCCGCCGAg -3'
miRNA:   3'- -UGGC--CCUCCUu----GCUGCGcGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 963 0.66 0.850509
Target:  5'- cGCUGcaGAGGAAUGGgcuucCGCGCCaCCGACa -3'
miRNA:   3'- -UGGCc-CUCCUUGCU-----GCGCGGcGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 1159 0.7 0.637264
Target:  5'- cCCGGGAGccACG--GCGCCGCCuACg -3'
miRNA:   3'- uGGCCCUCcuUGCugCGCGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 1349 0.71 0.56067
Target:  5'- aACCGGcuGGGGCuGaACGCGCCGCgGGCc -3'
miRNA:   3'- -UGGCCcuCCUUG-C-UGCGCGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 1900 0.66 0.840697
Target:  5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3'
miRNA:   3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 4249 0.67 0.777241
Target:  5'- gACgGGGAGGAggacgagaaggACGGCGgaGCCGaCgAGCg -3'
miRNA:   3'- -UGgCCCUCCU-----------UGCUGCg-CGGC-GgUUG- -5'
14638 5' -60.3 NC_003521.1 + 4318 0.7 0.627635
Target:  5'- gGCCGGGGGcucGACcguccaugccuGGCGCcaccGCCGCCGGCg -3'
miRNA:   3'- -UGGCCCUCc--UUG-----------CUGCG----CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 5301 0.7 0.637264
Target:  5'- cCCGGcauguuucgcGGGGGCGGCGUGCCccGCCGGCc -3'
miRNA:   3'- uGGCCc---------UCCUUGCUGCGCGG--CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 5693 0.7 0.637264
Target:  5'- uCCGcGGGGAACGG-GCGCCGUCAc- -3'
miRNA:   3'- uGGCcCUCCUUGCUgCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 7632 0.68 0.713574
Target:  5'- gUCGGGAacgaccgacGGuAACGGCG-GCCGCCAcgGCg -3'
miRNA:   3'- uGGCCCU---------CC-UUGCUGCgCGGCGGU--UG- -5'
14638 5' -60.3 NC_003521.1 + 7975 0.66 0.835294
Target:  5'- gGCCGGGAGGGuccGCGGCgGCGggggagguaCCGgggCAGCg -3'
miRNA:   3'- -UGGCCCUCCU---UGCUG-CGC---------GGCg--GUUG- -5'
14638 5' -60.3 NC_003521.1 + 10497 0.67 0.758613
Target:  5'- cGCCGGcGGGGAugGCGugGCcccccagGCgGCgCGACa -3'
miRNA:   3'- -UGGCC-CUCCU--UGCugCG-------CGgCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 12940 0.68 0.732186
Target:  5'- gGCCGGGAGGAGCaACaucUGCUGCUg-- -3'
miRNA:   3'- -UGGCCCUCCUUGcUGc--GCGGCGGuug -5'
14638 5' -60.3 NC_003521.1 + 13437 0.68 0.704171
Target:  5'- cGCCGaGGAcgacGGAcgucaagcgcaGCGGCgguaGCGCCGUCGACg -3'
miRNA:   3'- -UGGC-CCU----CCU-----------UGCUG----CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 13857 0.66 0.835294
Target:  5'- gGCgCGGGGGucucuGCgGGCgGCGCCGCCAu- -3'
miRNA:   3'- -UG-GCCCUCcu---UG-CUG-CGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 13895 0.73 0.45943
Target:  5'- cGCCGGGGGGccCGGCGCggaggggGCCGCgGAg -3'
miRNA:   3'- -UGGCCCUCCuuGCUGCG-------CGGCGgUUg -5'
14638 5' -60.3 NC_003521.1 + 16200 0.66 0.857857
Target:  5'- uGCUGGcccuucGAGGuGGCGGCGCccuGCCGCCuGGCc -3'
miRNA:   3'- -UGGCC------CUCC-UUGCUGCG---CGGCGG-UUG- -5'
14638 5' -60.3 NC_003521.1 + 16831 0.66 0.811262
Target:  5'- uGCCGcaGGAGGAggacaaucACGugGUGCCugaCAACg -3'
miRNA:   3'- -UGGC--CCUCCU--------UGCugCGCGGcg-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.