miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 17239 0.66 0.850509
Target:  5'- gGCCGaGGuGGA--GGCGCGCCGUa--- -3'
miRNA:   3'- -UGGC-CCuCCUugCUGCGCGGCGguug -5'
14638 5' -60.3 NC_003521.1 + 19452 0.66 0.848271
Target:  5'- --gGGGAGGcGCGGCgggaccaugucgcuGCGCgGCCAGg -3'
miRNA:   3'- uggCCCUCCuUGCUG--------------CGCGgCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 122229 0.66 0.842987
Target:  5'- aGCgCGGGugccGGCGACugaGCGCCGCCAc- -3'
miRNA:   3'- -UG-GCCCucc-UUGCUG---CGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 48363 0.66 0.842987
Target:  5'- cGCCGuccuGGAAacCGGCGcCGCCGCCAu- -3'
miRNA:   3'- -UGGCccu-CCUU--GCUGC-GCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 168999 0.66 0.842987
Target:  5'- -gCGGGAGGcgGGCGACGgG--GCCGGCa -3'
miRNA:   3'- ugGCCCUCC--UUGCUGCgCggCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 106286 0.66 0.842225
Target:  5'- cGCCGuGGAGGGcaacagcaaccagGCGGCG-GCCGUgcGCa -3'
miRNA:   3'- -UGGC-CCUCCU-------------UGCUGCgCGGCGguUG- -5'
14638 5' -60.3 NC_003521.1 + 1900 0.66 0.840697
Target:  5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3'
miRNA:   3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 202127 0.66 0.840697
Target:  5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3'
miRNA:   3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 7975 0.66 0.835294
Target:  5'- gGCCGGGAGGGuccGCGGCgGCGggggagguaCCGgggCAGCg -3'
miRNA:   3'- -UGGCCCUCCU---UGCUG-CGC---------GGCg--GUUG- -5'
14638 5' -60.3 NC_003521.1 + 220928 0.66 0.835294
Target:  5'- cACCaGGAacagcagcaGGAucagcgcCGACGCgGCCGUCAGCa -3'
miRNA:   3'- -UGGcCCU---------CCUu------GCUGCG-CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 219727 0.66 0.835294
Target:  5'- -gCGcGGAGGGAC--CGCGCCGUCGc- -3'
miRNA:   3'- ugGC-CCUCCUUGcuGCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 204263 0.66 0.835294
Target:  5'- cAUgGGGAGGcuggaGACGGCGCucgacaugaccgGCaUGCCGACg -3'
miRNA:   3'- -UGgCCCUCC-----UUGCUGCG------------CG-GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 142129 0.66 0.835294
Target:  5'- aGCUGGaGGcGGACGACGCGgaaaaCGCCAc- -3'
miRNA:   3'- -UGGCCcUC-CUUGCUGCGCg----GCGGUug -5'
14638 5' -60.3 NC_003521.1 + 61839 0.66 0.835294
Target:  5'- cCUGGGAGGGcgccGCGGaacCGCGgCGCCu-- -3'
miRNA:   3'- uGGCCCUCCU----UGCU---GCGCgGCGGuug -5'
14638 5' -60.3 NC_003521.1 + 88353 0.66 0.835294
Target:  5'- uUCGGGGaGAuCGugGcCGCCGCCuauGACg -3'
miRNA:   3'- uGGCCCUcCUuGCugC-GCGGCGG---UUG- -5'
14638 5' -60.3 NC_003521.1 + 13857 0.66 0.835294
Target:  5'- gGCgCGGGGGucucuGCgGGCgGCGCCGCCAu- -3'
miRNA:   3'- -UG-GCCCUCcu---UG-CUG-CGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 87245 0.66 0.835294
Target:  5'- uGCUGcagguGGuGGAGCGgcugugcgccguGCGCGUgGCCAACg -3'
miRNA:   3'- -UGGC-----CCuCCUUGC------------UGCGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 111207 0.66 0.832955
Target:  5'- cGCCGGGcGGccGGCGacucgacuauuagaGCGuCGCgGCCGGCg -3'
miRNA:   3'- -UGGCCCuCC--UUGC--------------UGC-GCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 196966 0.66 0.8306
Target:  5'- cCCGGGAGccGGcCGGgGCGCCugugacgggcccgcgGCCGGCg -3'
miRNA:   3'- uGGCCCUC--CUuGCUgCGCGG---------------CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 144916 0.66 0.827439
Target:  5'- uGCCGGuggccGAGGAguucAUGucGCGCGUCGCCGc- -3'
miRNA:   3'- -UGGCC-----CUCCU----UGC--UGCGCGGCGGUug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.