Results 21 - 40 of 285 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14638 | 5' | -60.3 | NC_003521.1 | + | 17239 | 0.66 | 0.850509 |
Target: 5'- gGCCGaGGuGGA--GGCGCGCCGUa--- -3' miRNA: 3'- -UGGC-CCuCCUugCUGCGCGGCGguug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 19452 | 0.66 | 0.848271 |
Target: 5'- --gGGGAGGcGCGGCgggaccaugucgcuGCGCgGCCAGg -3' miRNA: 3'- uggCCCUCCuUGCUG--------------CGCGgCGGUUg -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 122229 | 0.66 | 0.842987 |
Target: 5'- aGCgCGGGugccGGCGACugaGCGCCGCCAc- -3' miRNA: 3'- -UG-GCCCucc-UUGCUG---CGCGGCGGUug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 48363 | 0.66 | 0.842987 |
Target: 5'- cGCCGuccuGGAAacCGGCGcCGCCGCCAu- -3' miRNA: 3'- -UGGCccu-CCUU--GCUGC-GCGGCGGUug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 168999 | 0.66 | 0.842987 |
Target: 5'- -gCGGGAGGcgGGCGACGgG--GCCGGCa -3' miRNA: 3'- ugGCCCUCC--UUGCUGCgCggCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 106286 | 0.66 | 0.842225 |
Target: 5'- cGCCGuGGAGGGcaacagcaaccagGCGGCG-GCCGUgcGCa -3' miRNA: 3'- -UGGC-CCUCCU-------------UGCUGCgCGGCGguUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 1900 | 0.66 | 0.840697 |
Target: 5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3' miRNA: 3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 202127 | 0.66 | 0.840697 |
Target: 5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3' miRNA: 3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 7975 | 0.66 | 0.835294 |
Target: 5'- gGCCGGGAGGGuccGCGGCgGCGggggagguaCCGgggCAGCg -3' miRNA: 3'- -UGGCCCUCCU---UGCUG-CGC---------GGCg--GUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 220928 | 0.66 | 0.835294 |
Target: 5'- cACCaGGAacagcagcaGGAucagcgcCGACGCgGCCGUCAGCa -3' miRNA: 3'- -UGGcCCU---------CCUu------GCUGCG-CGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 219727 | 0.66 | 0.835294 |
Target: 5'- -gCGcGGAGGGAC--CGCGCCGUCGc- -3' miRNA: 3'- ugGC-CCUCCUUGcuGCGCGGCGGUug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 204263 | 0.66 | 0.835294 |
Target: 5'- cAUgGGGAGGcuggaGACGGCGCucgacaugaccgGCaUGCCGACg -3' miRNA: 3'- -UGgCCCUCC-----UUGCUGCG------------CG-GCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 142129 | 0.66 | 0.835294 |
Target: 5'- aGCUGGaGGcGGACGACGCGgaaaaCGCCAc- -3' miRNA: 3'- -UGGCCcUC-CUUGCUGCGCg----GCGGUug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 61839 | 0.66 | 0.835294 |
Target: 5'- cCUGGGAGGGcgccGCGGaacCGCGgCGCCu-- -3' miRNA: 3'- uGGCCCUCCU----UGCU---GCGCgGCGGuug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 88353 | 0.66 | 0.835294 |
Target: 5'- uUCGGGGaGAuCGugGcCGCCGCCuauGACg -3' miRNA: 3'- uGGCCCUcCUuGCugC-GCGGCGG---UUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 13857 | 0.66 | 0.835294 |
Target: 5'- gGCgCGGGGGucucuGCgGGCgGCGCCGCCAu- -3' miRNA: 3'- -UG-GCCCUCcu---UG-CUG-CGCGGCGGUug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 87245 | 0.66 | 0.835294 |
Target: 5'- uGCUGcagguGGuGGAGCGgcugugcgccguGCGCGUgGCCAACg -3' miRNA: 3'- -UGGC-----CCuCCUUGC------------UGCGCGgCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 111207 | 0.66 | 0.832955 |
Target: 5'- cGCCGGGcGGccGGCGacucgacuauuagaGCGuCGCgGCCGGCg -3' miRNA: 3'- -UGGCCCuCC--UUGC--------------UGC-GCGgCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 196966 | 0.66 | 0.8306 |
Target: 5'- cCCGGGAGccGGcCGGgGCGCCugugacgggcccgcgGCCGGCg -3' miRNA: 3'- uGGCCCUC--CUuGCUgCGCGG---------------CGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 144916 | 0.66 | 0.827439 |
Target: 5'- uGCCGGuggccGAGGAguucAUGucGCGCGUCGCCGc- -3' miRNA: 3'- -UGGCC-----CUCCU----UGC--UGCGCGGCGGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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