miRNA display CGI


Results 61 - 80 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 92384 0.66 0.811262
Target:  5'- cACCGGccaccccuGGAGCcgccGGCGCgGCCGCCcGCa -3'
miRNA:   3'- -UGGCCcu------CCUUG----CUGCG-CGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 103879 0.66 0.811262
Target:  5'- cGCCGacaGGGGGAugGGCugccGCGCgGUCAGg -3'
miRNA:   3'- -UGGC---CCUCCUugCUG----CGCGgCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 168351 0.66 0.811262
Target:  5'- uGCUGGcGAaGAGCGGCGCGUagcggcaGUCGGCg -3'
miRNA:   3'- -UGGCC-CUcCUUGCUGCGCGg------CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 28715 0.66 0.811262
Target:  5'- gACCGuGcGccaGAugGugGCGCaCGCCGACa -3'
miRNA:   3'- -UGGC-C-Cuc-CUugCugCGCG-GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 77634 0.66 0.811262
Target:  5'- cGCCGGccgaGAGGAuCGACGUguuggaacuGCCGUCGGg -3'
miRNA:   3'- -UGGCC----CUCCUuGCUGCG---------CGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 149301 0.66 0.811262
Target:  5'- uGCUGGaGcGcGACGACGCgGCCGCCGu- -3'
miRNA:   3'- -UGGCC-CuCcUUGCUGCG-CGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 167723 0.66 0.811262
Target:  5'- gGCCacGGuGGAuuGCGugGCGCUgcggugGCCGGCg -3'
miRNA:   3'- -UGGc-CCuCCU--UGCugCGCGG------CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 16831 0.66 0.811262
Target:  5'- uGCCGcaGGAGGAggacaaucACGugGUGCCugaCAACg -3'
miRNA:   3'- -UGGC--CCUCCU--------UGCugCGCGGcg-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 68535 0.66 0.811262
Target:  5'- cACCGGac--GGCGGCaGCgGCCGCCAACu -3'
miRNA:   3'- -UGGCCcuccUUGCUG-CG-CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 125408 0.66 0.810438
Target:  5'- cGCCGcggcgcugaguccGGAGGc-CGugGCgGCCGCCcGCg -3'
miRNA:   3'- -UGGC-------------CCUCCuuGCugCG-CGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 51119 0.66 0.808785
Target:  5'- aGCCGGGAGGGcugguugagacagcACGA-GCGCaGCgaCGACa -3'
miRNA:   3'- -UGGCCCUCCU--------------UGCUgCGCGgCG--GUUG- -5'
14638 5' -60.3 NC_003521.1 + 208068 0.67 0.806295
Target:  5'- -gCGGGAGGGAagagaaggagguUccuccgcgcccgcugGugGCGUCGCCAACc -3'
miRNA:   3'- ugGCCCUCCUU------------G---------------CugCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 88929 0.67 0.802955
Target:  5'- cACgGGcGAGcagcgaucacaGAGCGAgaGCGCCGCCAGa -3'
miRNA:   3'- -UGgCC-CUC-----------CUUGCUg-CGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 136119 0.67 0.802955
Target:  5'- gACUGGuguacGAGGcGCucuaccccguGGCGCGCCGCCAc- -3'
miRNA:   3'- -UGGCC-----CUCCuUG----------CUGCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 190522 0.67 0.802955
Target:  5'- cCUGGcuGAGGAGCGAgGUGCgGCggCAGCa -3'
miRNA:   3'- uGGCC--CUCCUUGCUgCGCGgCG--GUUG- -5'
14638 5' -60.3 NC_003521.1 + 119948 0.67 0.802955
Target:  5'- uGCaCGGGcGuGAUGACGCGCgGCCGc- -3'
miRNA:   3'- -UG-GCCCuCcUUGCUGCGCGgCGGUug -5'
14638 5' -60.3 NC_003521.1 + 89914 0.67 0.802955
Target:  5'- cGCCGu--GGAAgGGCGCGCagucgaugaCGCCGGCg -3'
miRNA:   3'- -UGGCccuCCUUgCUGCGCG---------GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 205004 0.67 0.802955
Target:  5'- -gCGGGAGacccgcuaacGACGGCGUGCCG-CGACg -3'
miRNA:   3'- ugGCCCUCc---------UUGCUGCGCGGCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 93973 0.67 0.802955
Target:  5'- -gCGGGAGGGgcggaggcgaggACGAgGCGCCcCCcaGACa -3'
miRNA:   3'- ugGCCCUCCU------------UGCUgCGCGGcGG--UUG- -5'
14638 5' -60.3 NC_003521.1 + 207434 0.67 0.802955
Target:  5'- aGCCaGGGA-GAGCGGCG-GCUGgCGGCg -3'
miRNA:   3'- -UGG-CCCUcCUUGCUGCgCGGCgGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.