Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14639 | 5' | -62.4 | NC_003521.1 | + | 145268 | 0.66 | 0.756985 |
Target: 5'- cUCCUCgGCCUCGgcggCCagcUCGcGCGccGGCg -3' miRNA: 3'- -AGGAGgCGGAGCa---GG---AGCcCGCu-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 83234 | 0.66 | 0.770956 |
Target: 5'- cCCUCgGCgcacuugaccagaUCGUCCUUGGcGUGGGGg -3' miRNA: 3'- aGGAGgCGg------------AGCAGGAGCC-CGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 40800 | 0.66 | 0.756985 |
Target: 5'- -aCUCCcggcgcggucaGCUauUCG-CCUCgGGGCGGGGCc -3' miRNA: 3'- agGAGG-----------CGG--AGCaGGAG-CCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 193459 | 0.66 | 0.739188 |
Target: 5'- cUUCUCCgGCUUCGU-CUCGGGUuuuguguuGGGGUu -3' miRNA: 3'- -AGGAGG-CGGAGCAgGAGCCCG--------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 75825 | 0.66 | 0.739188 |
Target: 5'- gUCCUugcggCCGaUCUCGcCCUCGGGaagauGGGCg -3' miRNA: 3'- -AGGA-----GGC-GGAGCaGGAGCCCgc---UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 221779 | 0.66 | 0.739188 |
Target: 5'- aUCUCCGUUucaUCGUCUUCcucGGCG-GGCa -3' miRNA: 3'- aGGAGGCGG---AGCAGGAGc--CCGCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 135924 | 0.66 | 0.772685 |
Target: 5'- gCCUCgGCCacggccgCGggaugugcgacgCCUCGGGCgccugcgacauGAGGCa -3' miRNA: 3'- aGGAGgCGGa------GCa-----------GGAGCCCG-----------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 73650 | 0.66 | 0.756985 |
Target: 5'- gCCUCCGCCgCGgccgCCUCcaagacgccCGAGGCg -3' miRNA: 3'- aGGAGGCGGaGCa---GGAGccc------GCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 106752 | 0.66 | 0.739188 |
Target: 5'- aCCUCCGC---GUCCa-GGGCGcccAGGCg -3' miRNA: 3'- aGGAGGCGgagCAGGagCCCGC---UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 148827 | 0.66 | 0.756985 |
Target: 5'- gCgaCCGCCU-GcCCUCGGcCGAGGUg -3' miRNA: 3'- aGgaGGCGGAgCaGGAGCCcGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 167290 | 0.66 | 0.756985 |
Target: 5'- aCCUCCGucugcgacggauCCUCGucgcccaccacaUCCUcCGGGuCGAGGa -3' miRNA: 3'- aGGAGGC------------GGAGC------------AGGA-GCCC-GCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 223755 | 0.66 | 0.790562 |
Target: 5'- aUCCUCCcacuCgUCGUCCUCGcugucGGCGccguuaccgccguGGGCc -3' miRNA: 3'- -AGGAGGc---GgAGCAGGAGC-----CCGC-------------UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 232980 | 0.66 | 0.774408 |
Target: 5'- gCCgUCCGCCacccccUCGUCUUCuGGCGccggauGGCc -3' miRNA: 3'- aGG-AGGCGG------AGCAGGAGcCCGCu-----CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 236590 | 0.66 | 0.739188 |
Target: 5'- cUCC-CCGUCUCgGUCCUCcucccgGGGCc-GGCu -3' miRNA: 3'- -AGGaGGCGGAG-CAGGAG------CCCGcuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 1067 | 0.66 | 0.7914 |
Target: 5'- cUCgaCCGaCCaUCGg---CGGGCGAGGCc -3' miRNA: 3'- -AGgaGGC-GG-AGCaggaGCCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 143417 | 0.66 | 0.739188 |
Target: 5'- gCUUUCGCCUgGgccagggcUCCUUcGGCGAGGUc -3' miRNA: 3'- aGGAGGCGGAgC--------AGGAGcCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 221384 | 0.66 | 0.751683 |
Target: 5'- gUCCUCCuCUUCGUCUUCccgguccugccGgcugcaguuguugucGGCGAGGCu -3' miRNA: 3'- -AGGAGGcGGAGCAGGAG-----------C---------------CCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 196448 | 0.66 | 0.7914 |
Target: 5'- ----aCGCacCUCGgCCUCGGGCGuGGGCc -3' miRNA: 3'- aggagGCG--GAGCaGGAGCCCGC-UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 74067 | 0.66 | 0.756985 |
Target: 5'- -gCUCacgCGCCgcUGUCUggCGGGCGAGGUc -3' miRNA: 3'- agGAG---GCGGa-GCAGGa-GCCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 117475 | 0.66 | 0.788881 |
Target: 5'- cUCCUCCacacccggcgacggGCCU-GUCC---GGCGGGGCg -3' miRNA: 3'- -AGGAGG--------------CGGAgCAGGagcCCGCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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