miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 145268 0.66 0.756985
Target:  5'- cUCCUCgGCCUCGgcggCCagcUCGcGCGccGGCg -3'
miRNA:   3'- -AGGAGgCGGAGCa---GG---AGCcCGCu-CCG- -5'
14639 5' -62.4 NC_003521.1 + 83234 0.66 0.770956
Target:  5'- cCCUCgGCgcacuugaccagaUCGUCCUUGGcGUGGGGg -3'
miRNA:   3'- aGGAGgCGg------------AGCAGGAGCC-CGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 40800 0.66 0.756985
Target:  5'- -aCUCCcggcgcggucaGCUauUCG-CCUCgGGGCGGGGCc -3'
miRNA:   3'- agGAGG-----------CGG--AGCaGGAG-CCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 193459 0.66 0.739188
Target:  5'- cUUCUCCgGCUUCGU-CUCGGGUuuuguguuGGGGUu -3'
miRNA:   3'- -AGGAGG-CGGAGCAgGAGCCCG--------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 75825 0.66 0.739188
Target:  5'- gUCCUugcggCCGaUCUCGcCCUCGGGaagauGGGCg -3'
miRNA:   3'- -AGGA-----GGC-GGAGCaGGAGCCCgc---UCCG- -5'
14639 5' -62.4 NC_003521.1 + 221779 0.66 0.739188
Target:  5'- aUCUCCGUUucaUCGUCUUCcucGGCG-GGCa -3'
miRNA:   3'- aGGAGGCGG---AGCAGGAGc--CCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 135924 0.66 0.772685
Target:  5'- gCCUCgGCCacggccgCGggaugugcgacgCCUCGGGCgccugcgacauGAGGCa -3'
miRNA:   3'- aGGAGgCGGa------GCa-----------GGAGCCCG-----------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 73650 0.66 0.756985
Target:  5'- gCCUCCGCCgCGgccgCCUCcaagacgccCGAGGCg -3'
miRNA:   3'- aGGAGGCGGaGCa---GGAGccc------GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 106752 0.66 0.739188
Target:  5'- aCCUCCGC---GUCCa-GGGCGcccAGGCg -3'
miRNA:   3'- aGGAGGCGgagCAGGagCCCGC---UCCG- -5'
14639 5' -62.4 NC_003521.1 + 148827 0.66 0.756985
Target:  5'- gCgaCCGCCU-GcCCUCGGcCGAGGUg -3'
miRNA:   3'- aGgaGGCGGAgCaGGAGCCcGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 167290 0.66 0.756985
Target:  5'- aCCUCCGucugcgacggauCCUCGucgcccaccacaUCCUcCGGGuCGAGGa -3'
miRNA:   3'- aGGAGGC------------GGAGC------------AGGA-GCCC-GCUCCg -5'
14639 5' -62.4 NC_003521.1 + 223755 0.66 0.790562
Target:  5'- aUCCUCCcacuCgUCGUCCUCGcugucGGCGccguuaccgccguGGGCc -3'
miRNA:   3'- -AGGAGGc---GgAGCAGGAGC-----CCGC-------------UCCG- -5'
14639 5' -62.4 NC_003521.1 + 232980 0.66 0.774408
Target:  5'- gCCgUCCGCCacccccUCGUCUUCuGGCGccggauGGCc -3'
miRNA:   3'- aGG-AGGCGG------AGCAGGAGcCCGCu-----CCG- -5'
14639 5' -62.4 NC_003521.1 + 236590 0.66 0.739188
Target:  5'- cUCC-CCGUCUCgGUCCUCcucccgGGGCc-GGCu -3'
miRNA:   3'- -AGGaGGCGGAG-CAGGAG------CCCGcuCCG- -5'
14639 5' -62.4 NC_003521.1 + 1067 0.66 0.7914
Target:  5'- cUCgaCCGaCCaUCGg---CGGGCGAGGCc -3'
miRNA:   3'- -AGgaGGC-GG-AGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 143417 0.66 0.739188
Target:  5'- gCUUUCGCCUgGgccagggcUCCUUcGGCGAGGUc -3'
miRNA:   3'- aGGAGGCGGAgC--------AGGAGcCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 221384 0.66 0.751683
Target:  5'- gUCCUCCuCUUCGUCUUCccgguccugccGgcugcaguuguugucGGCGAGGCu -3'
miRNA:   3'- -AGGAGGcGGAGCAGGAG-----------C---------------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 196448 0.66 0.7914
Target:  5'- ----aCGCacCUCGgCCUCGGGCGuGGGCc -3'
miRNA:   3'- aggagGCG--GAGCaGGAGCCCGC-UCCG- -5'
14639 5' -62.4 NC_003521.1 + 74067 0.66 0.756985
Target:  5'- -gCUCacgCGCCgcUGUCUggCGGGCGAGGUc -3'
miRNA:   3'- agGAG---GCGGa-GCAGGa-GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 117475 0.66 0.788881
Target:  5'- cUCCUCCacacccggcgacggGCCU-GUCC---GGCGGGGCg -3'
miRNA:   3'- -AGGAGG--------------CGGAgCAGGagcCCGCUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.