miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 9 0.67 0.693435
Target:  5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 1067 0.66 0.7914
Target:  5'- cUCgaCCGaCCaUCGg---CGGGCGAGGCc -3'
miRNA:   3'- -AGgaGGC-GG-AGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 5246 0.67 0.730167
Target:  5'- gUCCUcCCGCa-CGUCCcgCGGGUuguuguaccacaGGGGCc -3'
miRNA:   3'- -AGGA-GGCGgaGCAGGa-GCCCG------------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 9970 0.66 0.774408
Target:  5'- gUCC-CCGUCUgCccCCUCGGGaaagaacgaGAGGCa -3'
miRNA:   3'- -AGGaGGCGGA-GcaGGAGCCCg--------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 11846 0.68 0.627741
Target:  5'- gUCCUgCGCCgcccgCGcaccUCCUCGGaCGAGGa -3'
miRNA:   3'- -AGGAgGCGGa----GC----AGGAGCCcGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 12120 0.7 0.507462
Target:  5'- gCCgCCGCCgCGcUCCuUCGGGUGcGGCg -3'
miRNA:   3'- aGGaGGCGGaGC-AGG-AGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 29699 0.7 0.562156
Target:  5'- --aUCCGCUgCGUCCUCGGcGCcuGGCu -3'
miRNA:   3'- aggAGGCGGaGCAGGAGCC-CGcuCCG- -5'
14639 5' -62.4 NC_003521.1 + 37307 0.72 0.446717
Target:  5'- gCCUCCGUCUgcaCGucUCCUCuGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGA---GC--AGGAG-CCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 38233 0.68 0.637169
Target:  5'- ---gCgGCCUCGg---CGGGCGGGGCg -3'
miRNA:   3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 39823 0.72 0.446717
Target:  5'- gUCCUCCGCCgauggCGccugcuuggCCUcCGGcGUGGGGCu -3'
miRNA:   3'- -AGGAGGCGGa----GCa--------GGA-GCC-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 40331 0.67 0.693435
Target:  5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 40800 0.66 0.756985
Target:  5'- -aCUCCcggcgcggucaGCUauUCG-CCUCgGGGCGGGGCc -3'
miRNA:   3'- agGAGG-----------CGG--AGCaGGAG-CCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 45435 0.8 0.141842
Target:  5'- gCCUCCgauuacgguacgggcGCCUCGUCCUCGGGCGucaccuucacccGGCc -3'
miRNA:   3'- aGGAGG---------------CGGAGCAGGAGCCCGCu-----------CCG- -5'
14639 5' -62.4 NC_003521.1 + 46416 0.67 0.683193
Target:  5'- cCCUCgGCC---UCCUCGugcgaggguauccGGCGGGGCu -3'
miRNA:   3'- aGGAGgCGGagcAGGAGC-------------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 48399 0.74 0.324833
Target:  5'- cUCCUUCGUCUC--CCUCGagucucGGCGAGGCg -3'
miRNA:   3'- -AGGAGGCGGAGcaGGAGC------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 50190 0.67 0.694364
Target:  5'- cUCCUCCGCCUCcuGUCCgguccgcccgaagagCGcGaaggucaggucGCGGGGCc -3'
miRNA:   3'- -AGGAGGCGGAG--CAGGa--------------GC-C-----------CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 53204 0.67 0.702701
Target:  5'- cCCUCCggugagcucGCCggggaGUCCgCGGGCGAaGCg -3'
miRNA:   3'- aGGAGG---------CGGag---CAGGaGCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 53583 0.68 0.665405
Target:  5'- cCCggggCCGCCUCGaagcUCaCUUGGcUGAGGCu -3'
miRNA:   3'- aGGa---GGCGGAGC----AG-GAGCCcGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 57554 0.68 0.655066
Target:  5'- cCCgaaaUCCuCCUCGUCCUCGcGCGccuucgaGGGCg -3'
miRNA:   3'- aGG----AGGcGGAGCAGGAGCcCGC-------UCCG- -5'
14639 5' -62.4 NC_003521.1 + 59326 0.66 0.756985
Target:  5'- cUCCUCCGuacCCUgGUCCUucaccgagcUGGGauGGGCc -3'
miRNA:   3'- -AGGAGGC---GGAgCAGGA---------GCCCgcUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.