Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14639 | 5' | -62.4 | NC_003521.1 | + | 226284 | 0.7 | 0.54371 |
Target: 5'- -gCUCgGCCguggCGUacgagcCCUCGGGCGuGGUg -3' miRNA: 3'- agGAGgCGGa---GCA------GGAGCCCGCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 141328 | 0.71 | 0.458552 |
Target: 5'- cUCUUCUGCUUCGUCUUCuucugcgguucccacGGGUGcGGCg -3' miRNA: 3'- -AGGAGGCGGAGCAGGAG---------------CCCGCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 163085 | 0.71 | 0.463675 |
Target: 5'- gCCgaggCCgGCC-CGUCCUCGGGCGccAGcGCc -3' miRNA: 3'- aGGa---GG-CGGaGCAGGAGCCCGC--UC-CG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 88453 | 0.71 | 0.469689 |
Target: 5'- gUCgUCCGCCUCGgCgUCGGGCugcagcgaguugaaGAGGg -3' miRNA: 3'- -AGgAGGCGGAGCaGgAGCCCG--------------CUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 138182 | 0.71 | 0.480962 |
Target: 5'- gCCUCUGUCUCGauggCCUgGGGCaacGGGGUc -3' miRNA: 3'- aGGAGGCGGAGCa---GGAgCCCG---CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 224061 | 0.71 | 0.488843 |
Target: 5'- cUCUUCGucacccuCCUCGUCCUCcGGCGGGcGCg -3' miRNA: 3'- aGGAGGC-------GGAGCAGGAGcCCGCUC-CG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 71383 | 0.71 | 0.49767 |
Target: 5'- gCCgCCGCCgacgccgUCGUCCgCGuGaGCGAGGCg -3' miRNA: 3'- aGGaGGCGG-------AGCAGGaGC-C-CGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 12120 | 0.7 | 0.507462 |
Target: 5'- gCCgCCGCCgCGcUCCuUCGGGUGcGGCg -3' miRNA: 3'- aGGaGGCGGaGC-AGG-AGCCCGCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 154373 | 0.7 | 0.524562 |
Target: 5'- aCCUCUGUCgCGUCCUCGGucgccGCugccgccaaucagGAGGCg -3' miRNA: 3'- aGGAGGCGGaGCAGGAGCC-----CG-------------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 240050 | 0.72 | 0.446717 |
Target: 5'- gUCCUCCGCCgauggCGccugcuuggCCUcCGGcGUGGGGCu -3' miRNA: 3'- -AGGAGGCGGa----GCa--------GGA-GCC-CGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 75595 | 0.72 | 0.446717 |
Target: 5'- cUCUUCCGCUUCGcgUUCGGGCGGcgccacGGCu -3' miRNA: 3'- -AGGAGGCGGAGCagGAGCCCGCU------CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 74216 | 0.72 | 0.430112 |
Target: 5'- gUCUUCUGCCaCGUCCUgcgacaggUGGGCGucacGGGCa -3' miRNA: 3'- -AGGAGGCGGaGCAGGA--------GCCCGC----UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 68405 | 0.82 | 0.103328 |
Target: 5'- cUCCUCCGCCUCGggUCC-CGcGGCGAcGGCu -3' miRNA: 3'- -AGGAGGCGGAGC--AGGaGC-CCGCU-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 45435 | 0.8 | 0.141842 |
Target: 5'- gCCUCCgauuacgguacgggcGCCUCGUCCUCGGGCGucaccuucacccGGCc -3' miRNA: 3'- aGGAGG---------------CGGAGCAGGAGCCCGCu-----------CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 234812 | 0.8 | 0.151552 |
Target: 5'- cUCCUCgGCCUCGUCgUCGGGguuCGuGGCc -3' miRNA: 3'- -AGGAGgCGGAGCAGgAGCCC---GCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 153070 | 0.77 | 0.224367 |
Target: 5'- cUCCUCCGCCgcCGgggCC-CGGGCcGGGGCc -3' miRNA: 3'- -AGGAGGCGGa-GCa--GGaGCCCG-CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 193546 | 0.77 | 0.224367 |
Target: 5'- aCCUUCGCCggGaUCCUCGGGCGGuuuGGCc -3' miRNA: 3'- aGGAGGCGGagC-AGGAGCCCGCU---CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 139993 | 0.73 | 0.360131 |
Target: 5'- -aCUCgCGCUUC-UCCUCGGGCGAguGGUa -3' miRNA: 3'- agGAG-GCGGAGcAGGAGCCCGCU--CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 83865 | 0.73 | 0.381797 |
Target: 5'- cUCCUCCGuCCUCGacccagUCUUCGGGUGcaucugcGGGUg -3' miRNA: 3'- -AGGAGGC-GGAGC------AGGAGCCCGC-------UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 147348 | 0.72 | 0.413874 |
Target: 5'- cUCUUCGuCCUCGUCCgauUCGGGCauGGCg -3' miRNA: 3'- aGGAGGC-GGAGCAGG---AGCCCGcuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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