miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 148827 0.66 0.756985
Target:  5'- gCgaCCGCCU-GcCCUCGGcCGAGGUg -3'
miRNA:   3'- aGgaGGCGGAgCaGGAGCCcGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 221384 0.66 0.751683
Target:  5'- gUCCUCCuCUUCGUCUUCccgguccugccGgcugcaguuguugucGGCGAGGCu -3'
miRNA:   3'- -AGGAGGcGGAGCAGGAG-----------C---------------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 221779 0.66 0.739188
Target:  5'- aUCUCCGUUucaUCGUCUUCcucGGCG-GGCa -3'
miRNA:   3'- aGGAGGCGG---AGCAGGAGc--CCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 193459 0.66 0.739188
Target:  5'- cUUCUCCgGCUUCGU-CUCGGGUuuuguguuGGGGUu -3'
miRNA:   3'- -AGGAGG-CGGAGCAgGAGCCCG--------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 75825 0.66 0.739188
Target:  5'- gUCCUugcggCCGaUCUCGcCCUCGGGaagauGGGCg -3'
miRNA:   3'- -AGGA-----GGC-GGAGCaGGAGCCCgc---UCCG- -5'
14639 5' -62.4 NC_003521.1 + 143417 0.66 0.739188
Target:  5'- gCUUUCGCCUgGgccagggcUCCUUcGGCGAGGUc -3'
miRNA:   3'- aGGAGGCGGAgC--------AGGAGcCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 106752 0.66 0.739188
Target:  5'- aCCUCCGC---GUCCa-GGGCGcccAGGCg -3'
miRNA:   3'- aGGAGGCGgagCAGGagCCCGC---UCCG- -5'
14639 5' -62.4 NC_003521.1 + 236590 0.66 0.739188
Target:  5'- cUCC-CCGUCUCgGUCCUCcucccgGGGCc-GGCu -3'
miRNA:   3'- -AGGaGGCGGAG-CAGGAG------CCCGcuCCG- -5'
14639 5' -62.4 NC_003521.1 + 5246 0.67 0.730167
Target:  5'- gUCCUcCCGCa-CGUCCcgCGGGUuguuguaccacaGGGGCc -3'
miRNA:   3'- -AGGA-GGCGgaGCAGGa-GCCCG------------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 189332 0.67 0.721074
Target:  5'- aCC-CUGCUcaucaUCGucuUCCUCGGGCugccGGGGCa -3'
miRNA:   3'- aGGaGGCGG-----AGC---AGGAGCCCG----CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 160364 0.67 0.711916
Target:  5'- cUCCUCUuCCUCGUCgUCGuGGCucucugcGGCu -3'
miRNA:   3'- -AGGAGGcGGAGCAGgAGC-CCGcu-----CCG- -5'
14639 5' -62.4 NC_003521.1 + 72364 0.67 0.706393
Target:  5'- aUCUUCCGCCucgcccagcccguacUCGgcgUCCUCGucgaucaccagcGGCgGAGGCa -3'
miRNA:   3'- -AGGAGGCGG---------------AGC---AGGAGC------------CCG-CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 197396 0.67 0.706393
Target:  5'- gCCgCCGCCUCcUCgUCGGGCacgcaguaggaagggGAGGg -3'
miRNA:   3'- aGGaGGCGGAGcAGgAGCCCG---------------CUCCg -5'
14639 5' -62.4 NC_003521.1 + 227801 0.67 0.702701
Target:  5'- gUUCUCCGCCucggguuucUCGUCCUCGucCGAGu- -3'
miRNA:   3'- -AGGAGGCGG---------AGCAGGAGCccGCUCcg -5'
14639 5' -62.4 NC_003521.1 + 53204 0.67 0.702701
Target:  5'- cCCUCCggugagcucGCCggggaGUCCgCGGGCGAaGCg -3'
miRNA:   3'- aGGAGG---------CGGag---CAGGaGCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 107058 0.67 0.702701
Target:  5'- -aCUCCGCCgCGUCCcCGGaaucGCcGGGCc -3'
miRNA:   3'- agGAGGCGGaGCAGGaGCC----CGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 159892 0.67 0.701776
Target:  5'- cUCCUCCG-UUCGUCUUCuucGGCGAacgaggaagaggaGGCg -3'
miRNA:   3'- -AGGAGGCgGAGCAGGAGc--CCGCU-------------CCG- -5'
14639 5' -62.4 NC_003521.1 + 50190 0.67 0.694364
Target:  5'- cUCCUCCGCCUCcuGUCCgguccgcccgaagagCGcGaaggucaggucGCGGGGCc -3'
miRNA:   3'- -AGGAGGCGGAG--CAGGa--------------GC-C-----------CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 40331 0.67 0.693435
Target:  5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 240558 0.67 0.693435
Target:  5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.