miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1464 3' -55.4 NC_001335.1 + 13199 1.11 0.000767
Target:  5'- gGACCAGGCCGUCGAAUACCGGCAUCCc -3'
miRNA:   3'- -CUGGUCCGGCAGCUUAUGGCCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 27959 0.66 0.685104
Target:  5'- -uCCuGGCCGUCGAAguagaCGGCcuuGUCg -3'
miRNA:   3'- cuGGuCCGGCAGCUUaug--GCCG---UAGg -5'
1464 3' -55.4 NC_001335.1 + 30035 0.66 0.706723
Target:  5'- cGCC-GGCC-UCGAAggGCCgGGgGUCCa -3'
miRNA:   3'- cUGGuCCGGcAGCUUa-UGG-CCgUAGG- -5'
1464 3' -55.4 NC_001335.1 + 32845 0.66 0.728052
Target:  5'- aGCCgAGGCCGUCGuc-ACC-GUcgCCg -3'
miRNA:   3'- cUGG-UCCGGCAGCuuaUGGcCGuaGG- -5'
1464 3' -55.4 NC_001335.1 + 22397 0.75 0.247139
Target:  5'- aGACCGcaGCC-UCGAAugcagcUACCGGCAUCCa -3'
miRNA:   3'- -CUGGUc-CGGcAGCUU------AUGGCCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 6238 0.71 0.412291
Target:  5'- cACCAGGUCGcugccUCGGAcacgAUgGGCAUCCu -3'
miRNA:   3'- cUGGUCCGGC-----AGCUUa---UGgCCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 33796 0.7 0.470511
Target:  5'- gGAUCAGGUCGagguagUCGGucuugccgGCCGGCGUCa -3'
miRNA:   3'- -CUGGUCCGGC------AGCUua------UGGCCGUAGg -5'
1464 3' -55.4 NC_001335.1 + 36693 0.7 0.48062
Target:  5'- gGugCAGGuaGUCGAcugGCCGGCggUCg -3'
miRNA:   3'- -CugGUCCggCAGCUua-UGGCCGuaGG- -5'
1464 3' -55.4 NC_001335.1 + 1848 0.68 0.55401
Target:  5'- gGGCCAGcCUGUCGAAgaucgagggGCUGGUcgAUCCg -3'
miRNA:   3'- -CUGGUCcGGCAGCUUa--------UGGCCG--UAGG- -5'
1464 3' -55.4 NC_001335.1 + 51542 0.66 0.685104
Target:  5'- aACCGGagaaucuuGCCGcCGGAUuuucACCGGCA-CCg -3'
miRNA:   3'- cUGGUC--------CGGCaGCUUA----UGGCCGUaGG- -5'
1464 3' -55.4 NC_001335.1 + 20224 0.67 0.645737
Target:  5'- uGACCGGGuUCGUcCGAGggaugguccaacugGCCGGCGacggCCa -3'
miRNA:   3'- -CUGGUCC-GGCA-GCUUa-------------UGGCCGUa---GG- -5'
1464 3' -55.4 NC_001335.1 + 37881 0.69 0.519947
Target:  5'- cGACCGGGCgaacuccAUACCGGCGUCg -3'
miRNA:   3'- -CUGGUCCGgcagcu-UAUGGCCGUAGg -5'
1464 3' -55.4 NC_001335.1 + 36243 0.78 0.14866
Target:  5'- aGACUcGGCCGUCGAccgagaACCGGCcUCCg -3'
miRNA:   3'- -CUGGuCCGGCAGCUua----UGGCCGuAGG- -5'
1464 3' -55.4 NC_001335.1 + 49857 0.67 0.652322
Target:  5'- cGCCAGGuuGUCGAgccucugcgaGUGCaGGUAgacagCCg -3'
miRNA:   3'- cUGGUCCggCAGCU----------UAUGgCCGUa----GG- -5'
1464 3' -55.4 NC_001335.1 + 36742 0.77 0.179447
Target:  5'- aACCGGGCCGUCGuagACCuGGCGcagcggcUCCa -3'
miRNA:   3'- cUGGUCCGGCAGCuuaUGG-CCGU-------AGG- -5'
1464 3' -55.4 NC_001335.1 + 2119 0.7 0.490835
Target:  5'- -uCCuGGCUGUCGAGgugGCCccucgGGCGUUCg -3'
miRNA:   3'- cuGGuCCGGCAGCUUa--UGG-----CCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 3481 0.67 0.662187
Target:  5'- gGACgCA-GCCGUCGGA-GCCGgaaacgcugucguGCAUCCg -3'
miRNA:   3'- -CUG-GUcCGGCAGCUUaUGGC-------------CGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 42342 0.66 0.685104
Target:  5'- cGACCGGcgcgaGCCG-CGugcGUcUCGGCGUCCa -3'
miRNA:   3'- -CUGGUC-----CGGCaGCu--UAuGGCCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 8621 0.76 0.19504
Target:  5'- cGCCAGGCCGUCGAGgguuuccGCCucGGCGaugCCg -3'
miRNA:   3'- cUGGUCCGGCAGCUUa------UGG--CCGUa--GG- -5'
1464 3' -55.4 NC_001335.1 + 25804 0.7 0.450625
Target:  5'- -cCCucGCCGUCGGcggGCUGGCGUUCg -3'
miRNA:   3'- cuGGucCGGCAGCUua-UGGCCGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.