miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1464 3' -55.4 NC_001335.1 + 50844 0.68 0.55401
Target:  5'- aGCCAGGCCGaCag--GCCGgGCGUCa -3'
miRNA:   3'- cUGGUCCGGCaGcuuaUGGC-CGUAGg -5'
1464 3' -55.4 NC_001335.1 + 1848 0.68 0.55401
Target:  5'- gGGCCAGcCUGUCGAAgaucgagggGCUGGUcgAUCCg -3'
miRNA:   3'- -CUGGUCcGGCAGCUUa--------UGGCCG--UAGG- -5'
1464 3' -55.4 NC_001335.1 + 9841 0.68 0.554009
Target:  5'- aGCCuGGGaCCGUCGggU--CGGCGUCg -3'
miRNA:   3'- cUGG-UCC-GGCAGCuuAugGCCGUAGg -5'
1464 3' -55.4 NC_001335.1 + 13428 0.69 0.543286
Target:  5'- gGACUGGGCCccgaGGAUGCCGuGC-UCCu -3'
miRNA:   3'- -CUGGUCCGGcag-CUUAUGGC-CGuAGG- -5'
1464 3' -55.4 NC_001335.1 + 13290 0.69 0.532631
Target:  5'- cGugCGauGGCCG--GGAUGCCGGUAUUCg -3'
miRNA:   3'- -CugGU--CCGGCagCUUAUGGCCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 37881 0.69 0.519947
Target:  5'- cGACCGGGCgaacuccAUACCGGCGUCg -3'
miRNA:   3'- -CUGGUCCGgcagcu-UAUGGCCGUAGg -5'
1464 3' -55.4 NC_001335.1 + 2119 0.7 0.490835
Target:  5'- -uCCuGGCUGUCGAGgugGCCccucgGGCGUUCg -3'
miRNA:   3'- cuGGuCCGGCAGCUUa--UGG-----CCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 36772 0.7 0.490834
Target:  5'- cGACCGccGGCCaGUCGAcUACCuGCA-CCa -3'
miRNA:   3'- -CUGGU--CCGG-CAGCUuAUGGcCGUaGG- -5'
1464 3' -55.4 NC_001335.1 + 33076 0.7 0.490834
Target:  5'- cGGCCAaaGCCGUCGAAga-CGGUGUCg -3'
miRNA:   3'- -CUGGUc-CGGCAGCUUaugGCCGUAGg -5'
1464 3' -55.4 NC_001335.1 + 36693 0.7 0.48062
Target:  5'- gGugCAGGuaGUCGAcugGCCGGCggUCg -3'
miRNA:   3'- -CugGUCCggCAGCUua-UGGCCGuaGG- -5'
1464 3' -55.4 NC_001335.1 + 33796 0.7 0.470511
Target:  5'- gGAUCAGGUCGagguagUCGGucuugccgGCCGGCGUCa -3'
miRNA:   3'- -CUGGUCCGGC------AGCUua------UGGCCGUAGg -5'
1464 3' -55.4 NC_001335.1 + 25804 0.7 0.450625
Target:  5'- -cCCucGCCGUCGGcggGCUGGCGUUCg -3'
miRNA:   3'- cuGGucCGGCAGCUua-UGGCCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 42336 0.7 0.450624
Target:  5'- cGACCAGaUCGUCGcAAUcucgACCGGCAcgauUCCu -3'
miRNA:   3'- -CUGGUCcGGCAGC-UUA----UGGCCGU----AGG- -5'
1464 3' -55.4 NC_001335.1 + 5958 0.7 0.450624
Target:  5'- aGACCAGGCCcgagCGggUcggGCUGGCcugugCCg -3'
miRNA:   3'- -CUGGUCCGGca--GCuuA---UGGCCGua---GG- -5'
1464 3' -55.4 NC_001335.1 + 46506 0.71 0.430251
Target:  5'- uGACCgccgaggagaacaAGGCCGUgGAAUcgGCCGGCGg-- -3'
miRNA:   3'- -CUGG-------------UCCGGCAgCUUA--UGGCCGUagg -5'
1464 3' -55.4 NC_001335.1 + 20326 0.71 0.421686
Target:  5'- cGACCuGGCCGUC----GCCGGCcaguuggaccAUCCc -3'
miRNA:   3'- -CUGGuCCGGCAGcuuaUGGCCG----------UAGG- -5'
1464 3' -55.4 NC_001335.1 + 38900 0.71 0.420741
Target:  5'- --aCGGGCCaUCGAGUaccugcugaacccGCCGGcCGUCCa -3'
miRNA:   3'- cugGUCCGGcAGCUUA-------------UGGCC-GUAGG- -5'
1464 3' -55.4 NC_001335.1 + 35151 0.71 0.412291
Target:  5'- gGugCAGGCCcgGUCGAGUA-CGGgGUCUc -3'
miRNA:   3'- -CugGUCCGG--CAGCUUAUgGCCgUAGG- -5'
1464 3' -55.4 NC_001335.1 + 6238 0.71 0.412291
Target:  5'- cACCAGGUCGcugccUCGGAcacgAUgGGCAUCCu -3'
miRNA:   3'- cUGGUCCGGC-----AGCUUa---UGgCCGUAGG- -5'
1464 3' -55.4 NC_001335.1 + 31740 0.71 0.393895
Target:  5'- cACgAGGCCG-CGGAUGCCGaG-AUCCg -3'
miRNA:   3'- cUGgUCCGGCaGCUUAUGGC-CgUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.