miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 206711 0.66 0.993343
Target:  5'- uCGCGAuACGUGCgGGcGg--CGGGCu- -3'
miRNA:   3'- -GCGCUuUGUACGgCC-CaaaGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 142716 0.66 0.992263
Target:  5'- cCGCGAguccucgGACAUGU--GGUccUUCGAGUACg -3'
miRNA:   3'- -GCGCU-------UUGUACGgcCCA--AAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 113356 0.66 0.992366
Target:  5'- aGgGGGACggGCCGGGgg-CGAGgAg -3'
miRNA:   3'- gCgCUUUGuaCGGCCCaaaGCUCgUg -5'
14640 3' -52.5 NC_003521.1 + 224020 0.66 0.992366
Target:  5'- gGCGGgcccGGCG-GUCGGGg--CGGGCGCc -3'
miRNA:   3'- gCGCU----UUGUaCGGCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 203717 0.66 0.99325
Target:  5'- aGCGAcggcAGCAgcaGCCGGGg--CGAcacugucGCACg -3'
miRNA:   3'- gCGCU----UUGUa--CGGCCCaaaGCU-------CGUG- -5'
14640 3' -52.5 NC_003521.1 + 5659 0.66 0.994216
Target:  5'- gGCGGAGg--GUgGGGggUCGAGaCACg -3'
miRNA:   3'- gCGCUUUguaCGgCCCaaAGCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 131109 0.66 0.994921
Target:  5'- gGCGggGCGgcgcggcUGCCGGGaagggacAGCGCg -3'
miRNA:   3'- gCGCuuUGU-------ACGGCCCaaagc--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 82764 0.66 0.994995
Target:  5'- aCGCGcGACcgG-CGGGccgUgGAGCACa -3'
miRNA:   3'- -GCGCuUUGuaCgGCCCaa-AgCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 217648 0.66 0.995621
Target:  5'- uCGgGggGCAUGgcgggauCCGGGgguuuccaCGGGCGCu -3'
miRNA:   3'- -GCgCuuUGUAC-------GGCCCaaa-----GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 168470 0.66 0.995686
Target:  5'- gGCGAGGCGgaagaugaccUGCUGGuGcagUUCGAGC-Cg -3'
miRNA:   3'- gCGCUUUGU----------ACGGCC-Ca--AAGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 177898 0.66 0.994216
Target:  5'- gGCGGAACGaG-CGGGg--CGAGCGg -3'
miRNA:   3'- gCGCUUUGUaCgGCCCaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 6702 0.66 0.993343
Target:  5'- cCGCG-AGCGcUGCUGGGUcUCGccguGGUGCa -3'
miRNA:   3'- -GCGCuUUGU-ACGGCCCAaAGC----UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 34979 0.66 0.995686
Target:  5'- uCGCGGGcGCAgaaggucuCCGGGgccagCGAGCGCu -3'
miRNA:   3'- -GCGCUU-UGUac------GGCCCaaa--GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 97512 0.66 0.995686
Target:  5'- aGCGAGACcucgcagaGCuCGGGguggUCGAGgCGCu -3'
miRNA:   3'- gCGCUUUGua------CG-GCCCaa--AGCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 109503 0.66 0.994995
Target:  5'- aGCGAGugGUcgcGCCGGccgcugcUCGAGCAg -3'
miRNA:   3'- gCGCUUugUA---CGGCCcaa----AGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 166226 0.66 0.992366
Target:  5'- gGCGAGGCGcGCCGGccg-CGGGaCGCc -3'
miRNA:   3'- gCGCUUUGUaCGGCCcaaaGCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 229503 0.66 0.994995
Target:  5'- aGCGAcgucgAACGUGCCGGuga--GAGUAUa -3'
miRNA:   3'- gCGCU-----UUGUACGGCCcaaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 74898 0.66 0.99325
Target:  5'- gCGCGAGACGgugGCgGcGGUggagUCGgcccggcAGCGCg -3'
miRNA:   3'- -GCGCUUUGUa--CGgC-CCAa---AGC-------UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 36292 0.66 0.994216
Target:  5'- aGCaGAAAaacgagGCCGGGUg--GGGCGCa -3'
miRNA:   3'- gCG-CUUUgua---CGGCCCAaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 14580 0.66 0.993343
Target:  5'- aCGUGAAGCugcacacGCCGGGcuaCG-GCACg -3'
miRNA:   3'- -GCGCUUUGua-----CGGCCCaaaGCuCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.