miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 235530 1.11 0.007276
Target:  5'- cCGCGAAACAUGCCGGGUUUCGAGCACg -3'
miRNA:   3'- -GCGCUUUGUACGGCCCAAAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 45737 0.81 0.448442
Target:  5'- aCGCGGGuCAgGCCGGGUUUUGuAGCGCg -3'
miRNA:   3'- -GCGCUUuGUaCGGCCCAAAGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 102043 0.78 0.614214
Target:  5'- gCGCGcAGCAcgGCCGGGU--UGAGCACu -3'
miRNA:   3'- -GCGCuUUGUa-CGGCCCAaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 195753 0.75 0.763685
Target:  5'- aCGCGGAAgAUGuCCGGGUUUCc-GUACa -3'
miRNA:   3'- -GCGCUUUgUAC-GGCCCAAAGcuCGUG- -5'
14640 3' -52.5 NC_003521.1 + 50281 0.75 0.77306
Target:  5'- aGCGGcgcuucacgGACAUGCCGuuaGGUUUCGGGC-Cg -3'
miRNA:   3'- gCGCU---------UUGUACGGC---CCAAAGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 36840 0.74 0.782311
Target:  5'- gGCGcuGCuGUGCCGGGUa--GAGCACc -3'
miRNA:   3'- gCGCuuUG-UACGGCCCAaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 212650 0.74 0.791429
Target:  5'- gGCGGAGCAUGCaGGGUaUC-AGCAUg -3'
miRNA:   3'- gCGCUUUGUACGgCCCAaAGcUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 193274 0.74 0.800404
Target:  5'- uGCGGAGCggGUGCCGGGa--CGGGCGu -3'
miRNA:   3'- gCGCUUUG--UACGGCCCaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 124259 0.74 0.800404
Target:  5'- cCGCGcgGCAUGCUuGGUgucugCGGGCGCg -3'
miRNA:   3'- -GCGCuuUGUACGGcCCAaa---GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 79045 0.74 0.809229
Target:  5'- gCGUGAcaGACAUGgcguaggggguCCGGGgcUCGGGCACc -3'
miRNA:   3'- -GCGCU--UUGUAC-----------GGCCCaaAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 119495 0.73 0.850812
Target:  5'- gGUGAAGCcguugucgccAUGCCGGGUcaggugCGGGUACg -3'
miRNA:   3'- gCGCUUUG----------UACGGCCCAaa----GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 140190 0.72 0.866122
Target:  5'- gGCGGGACG-GCCGGuUUUCGAGguCc -3'
miRNA:   3'- gCGCUUUGUaCGGCCcAAAGCUCguG- -5'
14640 3' -52.5 NC_003521.1 + 130742 0.72 0.873467
Target:  5'- aGuCGGGACGUGUCGGcGggcgCGAGCGCc -3'
miRNA:   3'- gC-GCUUUGUACGGCC-Caaa-GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 111163 0.72 0.893542
Target:  5'- gCGUGAGauuguacgaauucACGUGCaCGGGgacgUUGAGCACc -3'
miRNA:   3'- -GCGCUU-------------UGUACG-GCCCaa--AGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 36532 0.72 0.900664
Target:  5'- cCGcCGGucgucGGCAUGCCGGucaugUCGAGCGCc -3'
miRNA:   3'- -GC-GCU-----UUGUACGGCCcaa--AGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 165873 0.71 0.906897
Target:  5'- aGCGGugcACGUGCuCGGGcggCGGGUACa -3'
miRNA:   3'- gCGCUu--UGUACG-GCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 186745 0.71 0.929487
Target:  5'- gGCGAGccCAUGCUGGGgcUCGgcGGCAUc -3'
miRNA:   3'- gCGCUUu-GUACGGCCCaaAGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 101119 0.71 0.929487
Target:  5'- cCGCGAGGgG-GgCGGGUcggCGGGCACg -3'
miRNA:   3'- -GCGCUUUgUaCgGCCCAaa-GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 149160 0.7 0.934545
Target:  5'- uGCGGAAUgcGCCaGGGagccgCGGGCACg -3'
miRNA:   3'- gCGCUUUGuaCGG-CCCaaa--GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 77669 0.7 0.939366
Target:  5'- uCGgGAGACAgcagGCCGGG----GGGCACg -3'
miRNA:   3'- -GCgCUUUGUa---CGGCCCaaagCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.