miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 81 0.68 0.977636
Target:  5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3'
miRNA:   3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5'
14640 3' -52.5 NC_003521.1 + 5659 0.66 0.994216
Target:  5'- gGCGGAGg--GUgGGGggUCGAGaCACg -3'
miRNA:   3'- gCGCUUUguaCGgCCCaaAGCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 6702 0.66 0.993343
Target:  5'- cCGCG-AGCGcUGCUGGGUcUCGccguGGUGCa -3'
miRNA:   3'- -GCGCuUUGU-ACGGCCCAaAGC----UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 12340 0.67 0.99128
Target:  5'- uGCGAGGCuaugGUGCUGGGcguggUGGGCGa -3'
miRNA:   3'- gCGCUUUG----UACGGCCCaaa--GCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 12929 0.67 0.985667
Target:  5'- gGCGGGACcaggGCCGGGag--GAGCAa -3'
miRNA:   3'- gCGCUUUGua--CGGCCCaaagCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 14580 0.66 0.993343
Target:  5'- aCGUGAAGCugcacacGCCGGGcuaCG-GCACg -3'
miRNA:   3'- -GCGCUUUGua-----CGGCCCaaaGCuCGUG- -5'
14640 3' -52.5 NC_003521.1 + 15444 0.67 0.988743
Target:  5'- aCGCGGAAUAaagagucGCUGGGUUcUGAGC-Cg -3'
miRNA:   3'- -GCGCUUUGUa------CGGCCCAAaGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 34979 0.66 0.995686
Target:  5'- uCGCGGGcGCAgaaggucuCCGGGgccagCGAGCGCu -3'
miRNA:   3'- -GCGCUU-UGUac------GGCCCaaa--GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 35087 0.67 0.985667
Target:  5'- gCGCucGACAUGCCGGa-UUCGAgGCGg -3'
miRNA:   3'- -GCGcuUUGUACGGCCcaAAGCU-CGUg -5'
14640 3' -52.5 NC_003521.1 + 36292 0.66 0.994216
Target:  5'- aGCaGAAAaacgagGCCGGGUg--GGGCGCa -3'
miRNA:   3'- gCG-CUUUgua---CGGCCCAaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 36532 0.72 0.900664
Target:  5'- cCGcCGGucgucGGCAUGCCGGucaugUCGAGCGCc -3'
miRNA:   3'- -GC-GCU-----UUGUACGGCCcaa--AGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 36840 0.74 0.782311
Target:  5'- gGCGcuGCuGUGCCGGGUa--GAGCACc -3'
miRNA:   3'- gCGCuuUG-UACGGCCCAaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 40176 0.67 0.99128
Target:  5'- gCGCGuuGGCGUGCCGguccaGGUUaagcUUGAGCGg -3'
miRNA:   3'- -GCGCu-UUGUACGGC-----CCAA----AGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 40915 0.68 0.981986
Target:  5'- aGCGAGGCGggggcgGcCCGGGg---GAGCGCc -3'
miRNA:   3'- gCGCUUUGUa-----C-GGCCCaaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 45737 0.81 0.448442
Target:  5'- aCGCGGGuCAgGCCGGGUUUUGuAGCGCg -3'
miRNA:   3'- -GCGCUUuGUaCGGCCCAAAGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 50281 0.75 0.77306
Target:  5'- aGCGGcgcuucacgGACAUGCCGuuaGGUUUCGGGC-Cg -3'
miRNA:   3'- gCGCU---------UUGUACGGC---CCAAAGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 59252 0.68 0.983906
Target:  5'- aCGUGggGC-UGCUGcGGgcgUUCGuaAGCGCg -3'
miRNA:   3'- -GCGCuuUGuACGGC-CCa--AAGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 64363 0.68 0.977636
Target:  5'- gGCGcccuGGACAUGcCCGaGGUg-CGGGCGCg -3'
miRNA:   3'- gCGC----UUUGUAC-GGC-CCAaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 74470 0.68 0.979898
Target:  5'- aGCGAGcACGUcCUGGGcUUCGAGCu- -3'
miRNA:   3'- gCGCUU-UGUAcGGCCCaAAGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 74898 0.66 0.99325
Target:  5'- gCGCGAGACGgugGCgGcGGUggagUCGgcccggcAGCGCg -3'
miRNA:   3'- -GCGCUUUGUa--CGgC-CCAa---AGC-------UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.